UHGV-0129991

Genome information

Genome length 37,801 bps

CDS count 63

Completeness 100.00% (complete)

geNomad score 0.9689

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129991
vOTU ID	vOTU-007292
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_319364
BioSample	SAMN01780057
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9689
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.37
Jumbo phage	No

Genome content
Genome length	37,801 bps
GC content	31.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	89.98%
Average CDS length	541.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129991_1	PHROG	phrog_14105	NA	unknown function
UHGV-0129991_1	UniRef90	UniRef90_UPI0010B54E72	pentapeptide repeat-containing protein	NA
UHGV-0129991_1	eggNOG-mapper	268407.PWYN_12330	dextransucrase activity	NA
UHGV-0129991_1	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0129991_1	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0129991_1	Structural annotation	PF01469	NA	NA
UHGV-0129991_2	PHROG	phrog_11013	NA	unknown function
UHGV-0129991_2	UniRef90	UniRef90_UPI001F4C8907	DNA-entry nuclease	NA
UHGV-0129991_2	eggNOG-mapper	1444310.JANV01000162_gene1199	NA	NA
UHGV-0129991_4	PHROG	phrog_17705	NA	unknown function
UHGV-0129991_4	Structural annotation	PF11195	NA	NA
UHGV-0129991_5	PHROG	phrog_7338	NA	unknown function
UHGV-0129991_5	UniRef90	UniRef90_A0A5C0SFH9	Helix-turn-helix domain-containing protein	NA
UHGV-0129991_5	eggNOG-mapper	931276.Cspa_c26540	Excisionase from transposon Tn916	NA
UHGV-0129991_5	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0129991_5	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0129991_6	UniRef90	UniRef90_UPI000EA0E616	helix-turn-helix domain-containing protein	NA
UHGV-0129991_6	eggNOG-mapper	1123239.KB898623_gene1335	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0129991_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129991_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0129991_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0129991_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0129991_7	UniRef90	UniRef90_UPI000EA2E30C	helix-turn-helix domain-containing protein	NA
UHGV-0129991_7	eggNOG-mapper	1122221.JHVI01000004_gene148	transcriptional regulator	NA
UHGV-0129991_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129991_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129991_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0129991_8	KOfam	K14059	int; integrase	NA
UHGV-0129991_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0129991_8	UniRef90	UniRef90_UPI0015714504	site-specific integrase	NA
UHGV-0129991_8	eggNOG-mapper	935948.KE386495_gene1213	Phage integrase family	NA
UHGV-0129991_8	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0129991_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129991_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0129991_8	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0129991_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0129991_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0129991_10	UniRef90	UniRef90_UPI000DCFF08B	helix-turn-helix domain-containing protein	NA
UHGV-0129991_10	eggNOG-mapper	1567011.A0A0A7RUJ5_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0129991_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0129991_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129991_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0129991_13	PHROG	phrog_9996	NA	unknown function
UHGV-0129991_13	UniRef90	UniRef90_A0A7U4JPX3	Replication-relaxation protein	NA
UHGV-0129991_13	eggNOG-mapper	1415774.U728_1053	NA	NA
UHGV-0129991_13	Pfam	PF13814	Replication-relaxation	Replic_Relax
UHGV-0129991_13	Structural annotation	PF18954, NF041423, COG1846	NA	NA
UHGV-0129991_14	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0129991_14	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0129991_14	UniRef90	UniRef90_A0A6B4XWY0	NA	NA
UHGV-0129991_14	eggNOG-mapper	1415774.U728_1054	FtsK/SpoIIIE family	NA
UHGV-0129991_14	PADLOC	SspH_00004	SspH	SSP
UHGV-0129991_14	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0129991_14	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0129991_14	Structural annotation	PF01580, PF17854, MF_00350, NF041214, COG0433	NA	NA
UHGV-0129991_15	eggNOG-mapper	641107.CDLVIII_4141	NA	NA
UHGV-0129991_17	PHROG	phrog_4223	NA	unknown function
UHGV-0129991_18	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0129991_18	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0129991_18	UniRef90	UniRef90_UPI000EA138AE	ParM/StbA family protein	NA
UHGV-0129991_18	eggNOG-mapper	1415774.U728_798	StbA protein	NA
UHGV-0129991_18	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0129991_18	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0129991_18	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0129991_18	Structural annotation	PF21522, PF17989, MF_02207, NF010498, COG1077	NA	NA
UHGV-0129991_19	PHROG	phrog_4223	NA	unknown function
UHGV-0129991_20	KOfam	K07273	acm; lysozyme	NA
UHGV-0129991_20	PHROG	phrog_6219	endolysin	lysis
UHGV-0129991_20	UniRef90	UniRef90_UPI000EA2B524	glycoside hydrolase	NA
UHGV-0129991_20	eggNOG-mapper	1294142.CINTURNW_1048	family 25	NA
UHGV-0129991_20	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0129991_20	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0129991_20	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0129991_21	PHROG	phrog_34399	NA	unknown function
UHGV-0129991_21	UniRef90	UniRef90_B2TMH8	Putative membrane protein	NA
UHGV-0129991_21	eggNOG-mapper	536232.CLM_1681	NA	NA
UHGV-0129991_22	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-0129991_22	UniRef90	UniRef90_UPI000BE2C14C	BhlA/UviB family holin-like peptide	NA
UHGV-0129991_22	eggNOG-mapper	1415774.U728_1063	BhlA holin family	NA
UHGV-0129991_22	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0129991_23	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0129991_23	PHROG	phrog_19519	neck protein	connector
UHGV-0129991_23	UniRef90	UniRef90_UPI0019058045	BppU family phage baseplate upper protein	NA
UHGV-0129991_23	eggNOG-mapper	1280689.AUJC01000011_gene1533	NA	NA
UHGV-0129991_23	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0129991_23	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0129991_23	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0129991_25	PHROG	phrog_7043	tail protein	tail
UHGV-0129991_25	UniRef90	UniRef90_UPI000EA2B1DE	phage tail protein	NA
UHGV-0129991_25	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0129991_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0129991_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0129991_25	COG	COG4926	Phage-related protein	NA
UHGV-0129991_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0129991_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0129991_26	UniRef90	UniRef90_UPI000C0747FD	phage tail family protein	NA
UHGV-0129991_26	eggNOG-mapper	573061.Clocel_0222	tail component	NA
UHGV-0129991_26	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0129991_26	COG	COG4722	Phage-related protein YomH	NA
UHGV-0129991_26	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0129991_27	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0129991_27	UniRef90	UniRef90_F8UBI0	Phage-related minor tail protein	NA
UHGV-0129991_27	eggNOG-mapper	1321778.HMPREF1982_03558	phage tail tape measure protein	NA
UHGV-0129991_27	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0129991_30	PHROG	phrog_885	major tail protein	tail
UHGV-0129991_30	eggNOG-mapper	764299.STRIC_1433	NA	NA
UHGV-0129991_30	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0129991_31	Structural annotation	PF20765	NA	NA
UHGV-0129991_32	UniRef90	UniRef90_UPI000C06B6F1	HK97 gp10 family phage protein	NA
UHGV-0129991_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0129991_32	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0129991_33	eggNOG-mapper	1391647.AVSV01000022_gene2564	NA	NA
UHGV-0129991_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0129991_34	eggNOG-mapper	1499683.CCFF01000005_gene71	NA	NA
UHGV-0129991_35	PHROG	phrog_544	major head protein	head and packaging
UHGV-0129991_35	UniRef90	UniRef90_A0A6M0WT90	N4-gp56 family major capsid protein	NA
UHGV-0129991_35	eggNOG-mapper	1499683.CCFF01000017_gene2147	NA	NA
UHGV-0129991_35	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0129991_35	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0129991_36	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0129991_36	UniRef90	UniRef90_UPI00082CC29D	NA	NA
UHGV-0129991_36	eggNOG-mapper	1499683.CCFF01000017_gene2146	NA	NA
UHGV-0129991_36	Pfam	PF14265	NA	DUF4355
UHGV-0129991_36	Structural annotation	PF14265	NA	NA
UHGV-0129991_39	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0129991_39	UniRef90	UniRef90_UPI000C06D26A	minor capsid protein	NA
UHGV-0129991_39	eggNOG-mapper	1499683.CCFF01000005_gene66	Phage Mu protein F like protein	NA
UHGV-0129991_39	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0129991_39	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0129991_39	COG	COG2369	NA	NA
UHGV-0129991_39	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0129991_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-0129991_40	UniRef90	UniRef90_A0A174QMT8	Phage portal protein	NA
UHGV-0129991_40	eggNOG-mapper	1499683.CCFF01000017_gene2144	portal protein, SPP1 Gp6-like	NA
UHGV-0129991_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0129991_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0129991_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129991_41	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0129991_41	UniRef90	UniRef90_UPI0019673EA3	PBSX family phage terminase large subunit	NA
UHGV-0129991_41	eggNOG-mapper	999411.HMPREF1092_03328	Phage terminase, large subunit, PBSX family	NA
UHGV-0129991_41	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0129991_41	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0129991_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0129991_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129991_41	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0129991_42	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0129991_42	UniRef90	UniRef90_A0A072Y3A7	Phage terminase, large subunit, PBSX family	NA
UHGV-0129991_42	eggNOG-mapper	999411.HMPREF1092_03330	DNA-packaging protein gp3	NA
UHGV-0129991_42	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0129991_44	PHROG	phrog_37916	NA	unknown function
UHGV-0129991_45	PHROG	phrog_10157	NA	unknown function
UHGV-0129991_45	UniRef90	UniRef90_UPI000C076F29	helix-turn-helix domain-containing protein	NA
UHGV-0129991_45	Structural annotation	PF04545, MF_00674, NF009180, COG2771	NA	NA
UHGV-0129991_48	PHROG	phrog_236	nucleotide kinase	other
UHGV-0129991_48	UniRef90	UniRef90_UPI001A9A39DC	NA	NA
UHGV-0129991_48	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0129991_48	Pfam	PF11753	NA	DUF3310
UHGV-0129991_50	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129991_50	UniRef90	UniRef90_A0A290GHM3	Metallophos domain-containing protein	NA
UHGV-0129991_51	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0129991_51	UniRef90	UniRef90_UPI000EA2D745	ERCC4 domain-containing protein	NA
UHGV-0129991_51	eggNOG-mapper	1443122.Z958_05760	ERCC4 domain	NA
UHGV-0129991_51	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0129991_51	Structural annotation	PF02732, NF040956	NA	NA
UHGV-0129991_53	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0129991_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0129991_53	UniRef90	UniRef90_UPI000C074B32	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0129991_53	eggNOG-mapper	1291050.JAGE01000001_gene2907	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0129991_53	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0129991_53	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0129991_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0129991_53	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0129991_54	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0129991_54	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129991_54	UniRef90	UniRef90_UPI000C087C34	single-stranded DNA-binding protein	NA
UHGV-0129991_54	eggNOG-mapper	1391647.AVSV01000022_gene2534	Single-stranded DNA-binding protein	NA
UHGV-0129991_54	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0129991_54	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0129991_54	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0129991_54	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0129991_54	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0129991_56	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0129991_56	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0129991_56	UniRef90	UniRef90_A0A4Q0VED6	DNA helicase	NA
UHGV-0129991_56	eggNOG-mapper	1408306.JHXX01000004_gene379	Participates in initiation and elongation during chromosome replication	NA
UHGV-0129991_56	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0129991_56	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0129991_56	COG	COG0305	Replicative DNA helicase	NA
UHGV-0129991_56	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0129991_57	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0129991_57	UniRef90	UniRef90_UPI001F0A212E	Replication protein O	NA
UHGV-0129991_57	eggNOG-mapper	1499683.CCFF01000014_gene3932	Transcriptional regulator	NA
UHGV-0129991_57	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0129991_57	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0129991_58	PHROG	phrog_14970	NA	unknown function
UHGV-0129991_58	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0129991_58	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0129991_58	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0129991_58	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0129991_58	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0129991_59	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0129991_59	UniRef90	UniRef90_UPI000C084940	siphovirus Gp157 family protein	NA
UHGV-0129991_59	eggNOG-mapper	1499683.CCFF01000014_gene3558	Siphovirus Gp157	NA
UHGV-0129991_59	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0129991_59	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0129991_61	PHROG	phrog_10625	NA	unknown function
UHGV-0129991_61	Structural annotation	PF14634	NA	NA
UHGV-0129991_63	PHROG	phrog_14105	NA	unknown function
UHGV-0129991_63	UniRef90	UniRef90_UPI000EDA8FF8	pentapeptide repeat-containing protein	NA
UHGV-0129991_63	eggNOG-mapper	742740.HMPREF9474_02378	dextransucrase activity	NA
UHGV-0129991_63	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0129991_63	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0129991_63	Structural annotation	PF01469	NA	NA