UHGV-0130058

Genome information

Genome length 36,801 bps

CDS count 51

Completeness 97.20% (high-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130058
vOTU ID	vOTU-014570
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_326987
BioSample	SAMN00715264
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.20% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.5
Jumbo phage	No

Genome content
Genome length	36,801 bps
GC content	36.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.43%
Average CDS length	671.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130058_1	KOfam	K06333	cotJB; spore coat protein JB	NA
UHGV-0130058_1	PHROG	phrog_34474	NA	unknown function
UHGV-0130058_1	UniRef90	UniRef90_R6K8D9	CotJB domain-containing protein	NA
UHGV-0130058_1	eggNOG-mapper	515620.EUBELI_00514	CotJB protein	NA
UHGV-0130058_1	Pfam	PF12652	CotJB protein	CotJB
UHGV-0130058_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0130058_2	PHROG	phrog_291	endolysin	lysis
UHGV-0130058_2	UniRef90	UniRef90_A0A1Q6KJN7	LysM domain-containing protein	NA
UHGV-0130058_2	eggNOG-mapper	397287.C807_01339	Glycosyl hydrolases family 25	NA
UHGV-0130058_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0130058_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0130058_2	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0130058_3	PHROG	phrog_199	holin	lysis
UHGV-0130058_3	UniRef90	UniRef90_A0A3B8UJ75	Holin	NA
UHGV-0130058_3	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-0130058_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0130058_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0130058_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0130058_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0130058_5	Structural annotation	PF04721	NA	NA
UHGV-0130058_7	PHROG	phrog_6616	tail protein	tail
UHGV-0130058_7	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0130058_7	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0130058_7	COG	COG4926	Phage-related protein	NA
UHGV-0130058_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0130058_8	PHROG	phrog_1401	NA	unknown function
UHGV-0130058_8	Structural annotation	PF07761	NA	NA
UHGV-0130058_9	PHROG	phrog_1194	NA	unknown function
UHGV-0130058_9	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0130058_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0130058_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0130058_10	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0130058_10	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0130058_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0130058_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0130058_11	PHROG	phrog_8355	NA	unknown function
UHGV-0130058_11	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0130058_11	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-0130058_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0130058_11	Structural annotation	PF06854	NA	NA
UHGV-0130058_12	PHROG	phrog_8300	NA	unknown function
UHGV-0130058_12	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0130058_12	Structural annotation	PF06896	NA	NA
UHGV-0130058_13	PHROG	phrog_820	major tail protein	tail
UHGV-0130058_13	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0130058_13	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0130058_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0130058_14	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0130058_14	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0130058_14	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0130058_14	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0130058_14	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0130058_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0130058_15	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0130058_16	PHROG	phrog_8710	NA	unknown function
UHGV-0130058_16	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0130058_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0130058_17	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0130058_18	PHROG	phrog_1378	NA	unknown function
UHGV-0130058_18	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0130058_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0130058_19	UniRef90	UniRef90_A0A356C4N2	Capsid protein	NA
UHGV-0130058_19	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0130058_20	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0130058_20	eggNOG-mapper	1298920.KI911353_gene4851	NA	NA
UHGV-0130058_22	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0130058_22	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-0130058_22	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-0130058_22	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0130058_22	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0130058_22	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0130058_22	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0130058_22	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0130058_23	UniRef90	UniRef90_A0A358PKZ1	CopG family transcriptional regulator	NA
UHGV-0130058_23	eggNOG-mapper	1235793.C809_02220	NA	NA
UHGV-0130058_23	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0130058_24	Structural annotation	PF14524, NF041178	NA	NA
UHGV-0130058_25	PHROG	phrog_32514	NA	unknown function
UHGV-0130058_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0130058_27	UniRef90	UniRef90_A0A3D5LQU4	Minor capsid protein	NA
UHGV-0130058_27	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0130058_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0130058_27	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0130058_27	Structural annotation	PF06152	NA	NA
UHGV-0130058_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0130058_28	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-0130058_28	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0130058_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0130058_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130058_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0130058_29	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-0130058_29	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0130058_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0130058_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0130058_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0130058_30	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0130058_30	UniRef90	UniRef90_A0A1C5UE81	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0130058_30	eggNOG-mapper	1139219.I569_01387	Helix-turn-helix of insertion element transposase	NA
UHGV-0130058_30	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0130058_30	Structural annotation	PF13022	NA	NA
UHGV-0130058_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0130058_31	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0130058_32	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0130058_32	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0130058_33	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0130058_33	UniRef90	UniRef90_A0A1C5VVJ6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0130058_33	eggNOG-mapper	1116375.VEJY3_09830	NA	NA
UHGV-0130058_33	Pfam	PF14359	NA	DUF4406
UHGV-0130058_33	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0130058_33	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-0130058_34	PHROG	phrog_15077	NA	unknown function
UHGV-0130058_34	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0130058_34	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0130058_34	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0130058_35	PHROG	phrog_8470	NA	unknown function
UHGV-0130058_35	UniRef90	UniRef90_UPI001D08730A	PcfJ domain-containing protein	NA
UHGV-0130058_35	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-0130058_35	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0130058_35	Structural annotation	PF14284	NA	NA
UHGV-0130058_36	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0130058_37	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0130058_37	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0130058_37	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0130058_37	eggNOG-mapper	1519464.HY22_13875	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0130058_37	Pfam	PF00075	RNase H	RNase_H
UHGV-0130058_37	COG	COG0328	Ribonuclease HI	NA
UHGV-0130058_37	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0130058_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0130058_38	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0130058_38	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0130058_41	PHROG	phrog_20040	NA	unknown function
UHGV-0130058_41	eggNOG-mapper	1538644.KO02_12130	NA	NA
UHGV-0130058_45	UniRef90	UniRef90_A0A356C6B4	XRE family transcriptional regulator	NA
UHGV-0130058_45	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0130058_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130058_46	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0130058_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0130058_46	UniRef90	UniRef90_A0A413YU20	Helix-turn-helix domain-containing protein	NA
UHGV-0130058_46	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-0130058_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0130058_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130058_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0130058_46	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0130058_47	PHROG	phrog_20886	NA	unknown function
UHGV-0130058_47	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0130058_47	Structural annotation	PF06114	NA	NA
UHGV-0130058_48	PHROG	phrog_3845	NA	unknown function
UHGV-0130058_48	UniRef90	UniRef90_UPI0019563C69	PH domain-containing protein	NA
UHGV-0130058_48	eggNOG-mapper	768710.DesyoDRAFT_5205	PFAM Tellurite resistance protein TerB	NA
UHGV-0130058_48	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0130058_49	PHROG	phrog_1847	NA	unknown function
UHGV-0130058_49	UniRef90	UniRef90_A0A174S171	Membrane-bound metallopeptidase	NA
UHGV-0130058_49	eggNOG-mapper	483218.BACPEC_01182	T5orf172	NA
UHGV-0130058_49	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0130058_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0130058_49	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0130058_50	eggNOG-mapper	1235792.C808_02931	NA	NA
UHGV-0130058_51	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0130058_51	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0130058_51	UniRef90	UniRef90_R5AEV9	Cytotoxic translational repressor of toxin-antitoxin stability system	NA
UHGV-0130058_51	eggNOG-mapper	97139.C824_00468	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0130058_51	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0130058_51	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0130058_51	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA