UHGV-0130136

Genome information

Genome length 17,420 bps

CDS count 25

Completeness 91.63% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130136
vOTU ID	vOTU-013131
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_326112
BioSample	SAMN00791904
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.44
Jumbo phage	No

Genome content
Genome length	17,420 bps
GC content	48.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	90.57%
Average CDS length	636.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130136_1	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0130136_2	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0130136_2	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0130136_2	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0130136_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0130136_3	UniRef90	UniRef90_A0A514AAQ6	Upper collar protein	NA
UHGV-0130136_3	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0130136_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0130136_3	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0130136_4	PHROG	phrog_2248	tail protein	tail
UHGV-0130136_4	UniRef90	UniRef90_A0A843HIT2	Caud_tail_N domain-containing protein	NA
UHGV-0130136_4	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0130136_4	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0130136_4	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0130136_5	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0130136_5	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0130136_5	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0130136_5	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0130136_7	UniRef90	UniRef90_A0A843HKM9	Phage_lysozyme2 domain-containing protein	NA
UHGV-0130136_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0130136_7	Structural annotation	PF18013	NA	NA
UHGV-0130136_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0130136_8	PHROG	phrog_435	endolysin	lysis
UHGV-0130136_8	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0130136_8	eggNOG-mapper	994573.T472_0212035	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0130136_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0130136_8	Pfam	PF05036	SPOR domain	SPOR
UHGV-0130136_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0130136_8	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0130136_9	PHROG	phrog_2150	terminase	head and packaging
UHGV-0130136_9	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0130136_9	eggNOG-mapper	1162304.I3PV13_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0130136_9	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0130136_9	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0130136_11	Structural annotation	PF20027	NA	NA
UHGV-0130136_15	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0130136_15	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0130136_15	UniRef90	UniRef90_A0A843HX23	DNA-directed DNA polymerase	NA
UHGV-0130136_15	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0130136_15	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0130136_15	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0130136_17	Structural annotation	PF17427	NA	NA
UHGV-0130136_18	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0130136_18	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0130136_18	UniRef90	UniRef90_A0A845RJ44	DNA methyltransferase	NA
UHGV-0130136_18	eggNOG-mapper	1316932.MHH_c17770	Belongs to the MT-A70-like family	NA
UHGV-0130136_18	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0130136_18	Pfam	PF05063	MT-A70	MT-A70
UHGV-0130136_18	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0130136_19	Structural annotation	PF17548	NA	NA
UHGV-0130136_24	Structural annotation	PF13763	NA	NA