UHGV-0130145

Genome information

Genome length 31,060 bps

CDS count 51

Completeness 91.78% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130145
vOTU ID	vOTU-066181
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_312348
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.13
Jumbo phage	No

Genome content
Genome length	31,060 bps
GC content	39.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.52%
Average CDS length	561.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130145_1	PHROG	phrog_3364	NA	unknown function
UHGV-0130145_1	UniRef90	UniRef90_UPI001EDFA2AF	ATP-binding protein	NA
UHGV-0130145_1	eggNOG-mapper	397291.C804_05801	Histidine kinase	NA
UHGV-0130145_1	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0130145_1	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0130145_1	Structural annotation	PF02518, MF_00637, TIGR01925, TIGR00377, COG2172	NA	NA
UHGV-0130145_2	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0130145_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0130145_2	UniRef90	UniRef90_A0A7X5EGQ0	Helix-turn-helix domain-containing protein	NA
UHGV-0130145_2	eggNOG-mapper	1235792.C808_00054	Helix-turn-helix XRE-family like proteins	NA
UHGV-0130145_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130145_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0130145_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0130145_4	UniRef90	UniRef90_B0G1C9	HTH cro/C1-type domain-containing protein	NA
UHGV-0130145_4	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0130145_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0130145_4	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0130145_7	Structural annotation	PF20063	NA	NA
UHGV-0130145_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0130145_11	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0130145_11	Structural annotation	PF01446	NA	NA
UHGV-0130145_12	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0130145_12	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0130145_12	UniRef90	UniRef90_A0A414UW29	RNase H type-1 domain-containing protein	NA
UHGV-0130145_12	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0130145_12	Pfam	PF00075	RNase H	RNase_H
UHGV-0130145_12	COG	COG0328	Ribonuclease HI	NA
UHGV-0130145_12	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0130145_13	PHROG	phrog_7566	NA	unknown function
UHGV-0130145_13	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0130145_14	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0130145_14	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0130145_14	UniRef90	UniRef90_A0A1Q6KU49	AAA_31 domain-containing protein	NA
UHGV-0130145_14	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0130145_14	Pfam	PF13614	AAA domain	AAA_31
UHGV-0130145_14	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0130145_14	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0130145_15	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0130145_15	PHROG	phrog_15982	NA	unknown function
UHGV-0130145_15	UniRef90	UniRef90_A7AY48	ParB domain-containing protein	NA
UHGV-0130145_15	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0130145_15	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0130145_15	Pfam	PF12961	NA	DUF3850
UHGV-0130145_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0130145_15	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0130145_16	PHROG	phrog_17690	NA	unknown function
UHGV-0130145_16	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0130145_16	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0130145_17	PHROG	phrog_31560	NA	unknown function
UHGV-0130145_17	eggNOG-mapper	904296.HMPREF9124_1723	NA	NA
UHGV-0130145_19	PHROG	phrog_8684	NA	unknown function
UHGV-0130145_19	UniRef90	UniRef90_UPI000677CD2A	YopX family protein	NA
UHGV-0130145_19	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0130145_19	Pfam	PF09643	YopX protein	YopX
UHGV-0130145_19	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0130145_21	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0130145_21	PHROG	phrog_5696	NA	unknown function
UHGV-0130145_21	UniRef90	UniRef90_A0A1C5WE14	Type I restriction-modification system methyltransferase subunit	NA
UHGV-0130145_21	eggNOG-mapper	1118057.CAGX01000058_gene108	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0130145_21	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0130145_21	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0130145_21	Structural annotation	COG0286	NA	NA
UHGV-0130145_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0130145_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0130145_22	UniRef90	UniRef90_UPI00156E0BE9	tyrosine-type recombinase/integrase	NA
UHGV-0130145_22	eggNOG-mapper	888743.HMPREF9141_2430	Belongs to the 'phage' integrase family	NA
UHGV-0130145_22	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0130145_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130145_22	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0130145_22	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0130145_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0130145_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130145_24	UniRef90	UniRef90_A0A174DTF6	Single-stranded DNA-binding protein	NA
UHGV-0130145_24	eggNOG-mapper	1232453.BAIF02000062_gene1851	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0130145_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0130145_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0130145_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0130145_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0130145_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0130145_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0130145_25	UniRef90	UniRef90_A0A373STV4	NA	NA
UHGV-0130145_25	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0130145_25	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0130145_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0130145_25	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0130145_26	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130145_26	UniRef90	UniRef90_UPI0009B7A9AF	HNH endonuclease	NA
UHGV-0130145_26	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0130145_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0130145_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0130145_26	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0130145_27	PHROG	phrog_104	portal protein	head and packaging
UHGV-0130145_27	UniRef90	UniRef90_UPI001A9C29A4	phage portal protein	NA
UHGV-0130145_27	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0130145_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0130145_28	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0130145_28	UniRef90	UniRef90_UPI00156EC2C0	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0130145_28	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-0130145_28	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0130145_28	COG	COG2369	NA	NA
UHGV-0130145_28	Structural annotation	PF15542	NA	NA
UHGV-0130145_29	PHROG	phrog_1865	NA	unknown function
UHGV-0130145_29	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-0130145_30	PHROG	phrog_17688	NA	unknown function
UHGV-0130145_30	UniRef90	UniRef90_R6SFU1	Putative phage terminase large subunit	NA
UHGV-0130145_30	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-0130145_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0130145_30	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0130145_31	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0130145_31	UniRef90	UniRef90_A0A0X8USY7	Phage scaffold protein	NA
UHGV-0130145_31	eggNOG-mapper	1280698.AUJS01000007_gene1037	NA	NA
UHGV-0130145_31	Pfam	PF14265	NA	DUF4355
UHGV-0130145_31	Structural annotation	PF14265	NA	NA
UHGV-0130145_32	PHROG	phrog_32396	NA	unknown function
UHGV-0130145_32	UniRef90	UniRef90_UPI001961D35B	phage major capsid protein	NA
UHGV-0130145_32	eggNOG-mapper	1280698.AUJS01000007_gene1038	Phage capsid family	NA
UHGV-0130145_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0130145_33	PHROG	phrog_36603	NA	unknown function
UHGV-0130145_34	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0130145_34	UniRef90	UniRef90_UPI0019617F49	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-0130145_34	eggNOG-mapper	1280698.AUJS01000007_gene1040	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0130145_34	Pfam	PF09355	NA	Phage_Gp19
UHGV-0130145_34	Structural annotation	PF09355	NA	NA
UHGV-0130145_35	PHROG	phrog_501	head closure Hc1	connector
UHGV-0130145_35	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-0130145_35	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0130145_36	PHROG	phrog_387	neck protein	connector
UHGV-0130145_36	eggNOG-mapper	1289597.M1PKU8_9CAUD	NA	NA
UHGV-0130145_37	PHROG	phrog_123	tail terminator	connector
UHGV-0130145_37	UniRef90	UniRef90_D2BQF4	NA	NA
UHGV-0130145_37	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0130145_37	Structural annotation	PF06141	NA	NA
UHGV-0130145_38	PHROG	phrog_117	major tail protein	tail
UHGV-0130145_38	UniRef90	UniRef90_UPI001F18A06D	phage tail protein	NA
UHGV-0130145_38	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0130145_38	COG	COG5492	NA	NA
UHGV-0130145_38	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0130145_39	PHROG	phrog_1526	NA	unknown function
UHGV-0130145_39	UniRef90	UniRef90_A0A1Q8EF45	NA	NA
UHGV-0130145_39	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0130145_40	PHROG	phrog_1633	NA	unknown function
UHGV-0130145_40	UniRef90	UniRef90_UPI00157064A0	NA	NA
UHGV-0130145_40	eggNOG-mapper	1280698.AUJS01000007_gene1046	NA	NA
UHGV-0130145_40	Pfam	PF17318	NA	DUF5361
UHGV-0130145_40	Structural annotation	PF17318	NA	NA
UHGV-0130145_41	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0130145_41	UniRef90	UniRef90_A0A174L0T5	Phage-related protein	NA
UHGV-0130145_41	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0130145_41	COG	COG1511	NA	NA
UHGV-0130145_41	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0130145_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0130145_42	UniRef90	UniRef90_UPI001F242491	phage tail family protein	NA
UHGV-0130145_42	eggNOG-mapper	1280698.AUJS01000007_gene1048	NA	NA
UHGV-0130145_42	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0130145_43	PHROG	phrog_538	minor tail protein	tail
UHGV-0130145_43	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0130145_43	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-0130145_43	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0130145_43	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0130145_44	PHROG	phrog_25635	NA	unknown function
UHGV-0130145_44	eggNOG-mapper	411461.DORFOR_00732	NA	NA
UHGV-0130145_44	Structural annotation	PF20747, PF17900	NA	NA
UHGV-0130145_45	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0130145_45	PHROG	phrog_11157	NA	unknown function
UHGV-0130145_45	UniRef90	UniRef90_A0A374BT09	Big_13 domain-containing protein	NA
UHGV-0130145_45	eggNOG-mapper	742765.HMPREF9457_03368	NA	NA
UHGV-0130145_45	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0130145_45	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0130145_45	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0130145_45	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0130145_45	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0130145_46	PHROG	phrog_32322	NA	unknown function
UHGV-0130145_46	UniRef90	UniRef90_A0A374BVJ2	Ig-like_bact domain-containing protein	NA
UHGV-0130145_46	eggNOG-mapper	411461.DORFOR_01183	NA	NA
UHGV-0130145_46	Pfam	PF13754	NA	Big_3_4
UHGV-0130145_47	eggNOG-mapper	411461.DORFOR_01184	NA	NA
UHGV-0130145_47	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0130145_48	eggNOG-mapper	411461.DORFOR_00723	NA	NA
UHGV-0130145_49	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0130145_49	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0130145_50	PHROG	phrog_1129	holin	lysis
UHGV-0130145_50	UniRef90	UniRef90_UPI00156E9657	phage holin family protein	NA
UHGV-0130145_50	eggNOG-mapper	553973.CLOHYLEM_07148	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0130145_50	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0130145_50	Structural annotation	PF16079	NA	NA
UHGV-0130145_51	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0130145_51	PHROG	phrog_435	endolysin	lysis
UHGV-0130145_51	UniRef90	UniRef90_A0A374BT17	MurNAc-LAA domain-containing protein	NA
UHGV-0130145_51	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0130145_51	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0130145_51	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0130145_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0130145_51	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA