UHGV-0130155

Genome information

Genome length 55,787 bps

CDS count 74

Completeness 97.87% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130155
vOTU ID	vOTU-011877
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_335178
BioSample	SAMN00791921
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.87% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.67
Jumbo phage	No

Genome content
Genome length	55,787 bps
GC content	44.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	93.70%
Average CDS length	708.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130155_1	PHROG	phrog_14010	NA	unknown function
UHGV-0130155_1	eggNOG-mapper	1235788.C802_00118	NA	NA
UHGV-0130155_1	Pfam	PF20186	NA	DUF6549
UHGV-0130155_1	Structural annotation	PF20186	NA	NA
UHGV-0130155_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0130155_2	PHROG	phrog_435	endolysin	lysis
UHGV-0130155_2	UniRef90	UniRef90_A0A3R6MP91	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0130155_2	eggNOG-mapper	411476.BACOVA_03951	COG NOG32858 non supervised orthologous group	NA
UHGV-0130155_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0130155_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0130155_2	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0130155_3	PHROG	phrog_19698	NA	unknown function
UHGV-0130155_3	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-0130155_4	PHROG	phrog_29953	NA	unknown function
UHGV-0130155_5	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0130155_5	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0130155_5	UniRef90	UniRef90_A0A3R6IWS6	Reverse transcriptase	NA
UHGV-0130155_5	eggNOG-mapper	449673.BACSTE_02153	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0130155_5	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0130155_5	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0130155_5	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0130155_5	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0130155_6	PHROG	phrog_5302	tail protein	tail
UHGV-0130155_6	eggNOG-mapper	449673.BACSTE_02155	NA	NA
UHGV-0130155_6	Structural annotation	PF03781, COG1262	NA	NA
UHGV-0130155_7	PHROG	phrog_22750	NA	unknown function
UHGV-0130155_7	eggNOG-mapper	449673.BACSTE_02156	NA	NA
UHGV-0130155_8	PHROG	phrog_38535	NA	unknown function
UHGV-0130155_8	UniRef90	UniRef90_A0A7M1RUA0	Putative lipoprotein	NA
UHGV-0130155_8	eggNOG-mapper	1121098.HMPREF1534_01108	NA	NA
UHGV-0130155_8	Structural annotation	NF008028, COG5544	NA	NA
UHGV-0130155_9	PHROG	phrog_15074	NA	unknown function
UHGV-0130155_9	UniRef90	UniRef90_A0A4V3WYY8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0130155_9	eggNOG-mapper	449673.BACSTE_02158	Phage minor structural protein	NA
UHGV-0130155_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0130155_9	COG	COG4926	Phage-related protein	NA
UHGV-0130155_9	Structural annotation	PF14594, PF13385, PF21567, TIGR01665, COG4926	NA	NA
UHGV-0130155_10	PHROG	phrog_14220	NA	unknown function
UHGV-0130155_10	UniRef90	UniRef90_A0A415GRY6	LamG domain-containing protein	NA
UHGV-0130155_10	eggNOG-mapper	449673.BACSTE_02159	NA	NA
UHGV-0130155_10	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0130155_10	Structural annotation	PF13385, PF05709, TIGR01633, COG4722	NA	NA
UHGV-0130155_11	PHROG	phrog_10156	NA	unknown function
UHGV-0130155_11	eggNOG-mapper	449673.BACSTE_02160	NA	NA
UHGV-0130155_12	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0130155_12	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0130155_12	UniRef90	UniRef90_A0A4S4H873	Phage tail tape measure protein	NA
UHGV-0130155_12	eggNOG-mapper	449673.BACSTE_02161	Tape measure domain protein	NA
UHGV-0130155_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0130155_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0130155_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0130155_13	PHROG	phrog_11996	NA	unknown function
UHGV-0130155_14	PHROG	phrog_15994	NA	unknown function
UHGV-0130155_15	PHROG	phrog_6767	NA	unknown function
UHGV-0130155_15	UniRef90	UniRef90_A0A1V5JMX0	BACON domain-containing protein	NA
UHGV-0130155_15	eggNOG-mapper	449673.BACSTE_02164	NA	NA
UHGV-0130155_15	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0130155_16	PHROG	phrog_5597	NA	unknown function
UHGV-0130155_16	Structural annotation	PF05657	NA	NA
UHGV-0130155_17	PHROG	phrog_5377	NA	unknown function
UHGV-0130155_17	UniRef90	UniRef90_UPI0004BAB2BB	HK97 gp10 family phage protein	NA
UHGV-0130155_17	eggNOG-mapper	449673.BACSTE_02166	NA	NA
UHGV-0130155_18	PHROG	phrog_26372	NA	unknown function
UHGV-0130155_18	Structural annotation	PF19586, TIGR01563	NA	NA
UHGV-0130155_19	PHROG	phrog_16646	NA	unknown function
UHGV-0130155_19	eggNOG-mapper	449673.BACSTE_02168	NA	NA
UHGV-0130155_19	Pfam	PF20449	NA	DUF6706
UHGV-0130155_19	Structural annotation	PF20449	NA	NA
UHGV-0130155_21	PHROG	phrog_29	major head protein	head and packaging
UHGV-0130155_21	UniRef90	UniRef90_UPI001D0917C0	major capsid protein	NA
UHGV-0130155_21	eggNOG-mapper	449673.BACSTE_02170	NA	NA
UHGV-0130155_21	Structural annotation	PF03864, MF_04133, NF041162, COG4834	NA	NA
UHGV-0130155_22	PHROG	phrog_9196	NA	unknown function
UHGV-0130155_22	eggNOG-mapper	449673.BACSTE_02171	NA	NA
UHGV-0130155_22	Structural annotation	PF21430, NF009633	NA	NA
UHGV-0130155_23	PHROG	phrog_5824	NA	unknown function
UHGV-0130155_23	eggNOG-mapper	449673.BACSTE_02172	NA	NA
UHGV-0130155_27	Structural annotation	PF11184	NA	NA
UHGV-0130155_28	eggNOG-mapper	873513.HMPREF6485_1278	NA	NA
UHGV-0130155_30	PHROG	phrog_28300	NA	unknown function
UHGV-0130155_30	Structural annotation	PF13066, COG4014	NA	NA
UHGV-0130155_31	PHROG	phrog_15937	NA	unknown function
UHGV-0130155_31	eggNOG-mapper	1121100.JCM6294_1075	NA	NA
UHGV-0130155_32	PHROG	phrog_8684	NA	unknown function
UHGV-0130155_32	UniRef90	UniRef90_A0A415GS05	YopX domain-containing protein	NA
UHGV-0130155_32	eggNOG-mapper	411473.RUMCAL_00280	YopX protein	NA
UHGV-0130155_32	Pfam	PF09643	YopX protein	YopX
UHGV-0130155_33	UniRef90	UniRef90_UPI0013D52378	NA	NA
UHGV-0130155_33	eggNOG-mapper	1492737.FEM08_13540	NA	NA
UHGV-0130155_33	Structural annotation	PF09723, COG2331	NA	NA
UHGV-0130155_34	PHROG	phrog_24381	NA	unknown function
UHGV-0130155_36	PHROG	phrog_16625	NA	unknown function
UHGV-0130155_36	UniRef90	UniRef90_A0A415GRX4	LPD3 domain-containing protein	NA
UHGV-0130155_36	eggNOG-mapper	449673.BACSTE_02189	NA	NA
UHGV-0130155_36	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0130155_36	Structural annotation	PF06152, PF18813	NA	NA
UHGV-0130155_37	PHROG	phrog_25586	NA	unknown function
UHGV-0130155_37	Structural annotation	PF02170	NA	NA
UHGV-0130155_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-0130155_38	UniRef90	UniRef90_A0A415GRY9	Phage portal protein	NA
UHGV-0130155_38	eggNOG-mapper	449673.BACSTE_02191	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0130155_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0130155_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0130155_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130155_39	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0130155_39	UniRef90	UniRef90_A0A415GRY1	Phage portal protein	NA
UHGV-0130155_39	eggNOG-mapper	449673.BACSTE_02192	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0130155_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0130155_39	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0130155_39	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0130155_40	PHROG	phrog_15125	NA	unknown function
UHGV-0130155_40	eggNOG-mapper	449673.BACSTE_02193	NA	NA
UHGV-0130155_41	PHROG	phrog_18290	NA	unknown function
UHGV-0130155_41	eggNOG-mapper	449673.BACSTE_02194	NA	NA
UHGV-0130155_42	PHROG	phrog_16681	NA	unknown function
UHGV-0130155_42	UniRef90	UniRef90_R5I2U0	FHA domain-containing protein	NA
UHGV-0130155_42	eggNOG-mapper	449673.BACSTE_02195	NA	NA
UHGV-0130155_44	eggNOG-mapper	1123008.KB905702_gene2347	cell adhesion	NA
UHGV-0130155_44	COG	COG2369	NA	NA
UHGV-0130155_46	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0130155_46	UniRef90	UniRef90_A0A3R6JEN0	NA	NA
UHGV-0130155_46	eggNOG-mapper	449673.BACSTE_02196	ParB-like nuclease domain	NA
UHGV-0130155_46	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0130155_46	Pfam	PF14386	NA	DUF4417
UHGV-0130155_46	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0130155_46	Structural annotation	PF14386, PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0130155_47	PHROG	phrog_16697	NA	unknown function
UHGV-0130155_47	eggNOG-mapper	449673.BACSTE_02197	NA	NA
UHGV-0130155_48	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0130155_48	eggNOG-mapper	449673.BACSTE_02198	NA	NA
UHGV-0130155_48	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-0130155_50	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0130155_50	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0130155_50	UniRef90	UniRef90_A0A3R6I4B1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0130155_50	eggNOG-mapper	449673.BACSTE_02204	KorB domain	NA
UHGV-0130155_50	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0130155_50	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0130155_50	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0130155_50	Structural annotation	PF02195, PF07506, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0130155_51	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0130155_51	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0130155_51	UniRef90	UniRef90_A0A415GRX6	Methyltransferase	NA
UHGV-0130155_51	eggNOG-mapper	553220.CAMGR0001_2118	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0130155_51	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0130155_51	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0130155_51	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0130155_51	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0130155_52	PHROG	phrog_2994	NA	unknown function
UHGV-0130155_53	PHROG	phrog_8581	NA	unknown function
UHGV-0130155_53	eggNOG-mapper	449673.BACSTE_02205	NA	NA
UHGV-0130155_54	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0130155_54	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0130155_54	UniRef90	UniRef90_A0A4S2GCV3	Cytosine-specific methyltransferase	NA
UHGV-0130155_54	eggNOG-mapper	1121100.JCM6294_1074	C-5 cytosine-specific DNA methylase	NA
UHGV-0130155_54	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0130155_54	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0130155_54	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0130155_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0130155_54	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0130155_55	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0130155_55	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0130155_55	UniRef90	UniRef90_A0A3R6FJC0	ATP-binding protein	NA
UHGV-0130155_55	eggNOG-mapper	411901.BACCAC_01187	DNA-dependent DNA replication	NA
UHGV-0130155_55	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-0130155_55	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0130155_55	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0130155_56	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0130155_56	eggNOG-mapper	1235788.C802_00057	NA	NA
UHGV-0130155_56	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0130155_57	PHROG	phrog_11501	NA	unknown function
UHGV-0130155_57	eggNOG-mapper	449673.BACSTE_02209	NA	NA
UHGV-0130155_57	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0130155_58	PHROG	phrog_12688	NA	unknown function
UHGV-0130155_58	eggNOG-mapper	449673.BACSTE_02210	NA	NA
UHGV-0130155_58	Structural annotation	PF10382, TIGR02276	NA	NA
UHGV-0130155_59	PHROG	phrog_11581	NA	unknown function
UHGV-0130155_59	eggNOG-mapper	449673.BACSTE_02211	NA	NA
UHGV-0130155_60	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0130155_60	eggNOG-mapper	449673.BACSTE_02213	NA	NA
UHGV-0130155_60	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0130155_61	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0130155_61	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0130155_61	UniRef90	UniRef90_A0A3R6KB23	MBL fold metallo-hydrolase	NA
UHGV-0130155_61	eggNOG-mapper	449673.BACSTE_02214	Metallo-beta-lactamase superfamily	NA
UHGV-0130155_61	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0130155_61	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0130155_61	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0130155_62	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0130155_62	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0130155_62	UniRef90	UniRef90_A0A415GRV0	Recombinase	NA
UHGV-0130155_62	eggNOG-mapper	449673.BACSTE_02215	RecT family	NA
UHGV-0130155_62	Pfam	PF03837	RecT family	RecT
UHGV-0130155_62	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0130155_62	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0130155_62	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0130155_63	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0130155_63	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130155_63	UniRef90	UniRef90_A0A3R6G6S4	AAA_23 domain-containing protein	NA
UHGV-0130155_63	eggNOG-mapper	449673.BACSTE_02216	P-loop containing region of AAA domain	NA
UHGV-0130155_63	Pfam	PF13476	AAA domain	AAA_23
UHGV-0130155_63	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0130155_63	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0130155_65	PHROG	phrog_17289	NA	unknown function
UHGV-0130155_65	UniRef90	UniRef90_A0A4U1C702	Helix-turn-helix domain-containing protein	NA
UHGV-0130155_65	eggNOG-mapper	449673.BACSTE_02217	NA	NA
UHGV-0130155_65	Structural annotation	PF11112	NA	NA
UHGV-0130155_66	Structural annotation	MF_01597	NA	NA
UHGV-0130155_67	UniRef90	UniRef90_A0A415GRW5	XRE family transcriptional regulator	NA
UHGV-0130155_67	eggNOG-mapper	1235788.C802_00044	NA	NA
UHGV-0130155_67	Structural annotation	PF01381, TIGR02607, COG1476	NA	NA
UHGV-0130155_68	UniRef90	UniRef90_A0A3R6JEM0	Helix-turn-helix domain-containing protein	NA
UHGV-0130155_68	eggNOG-mapper	1235788.C802_00043	Helix-turn-helix XRE-family like proteins	NA
UHGV-0130155_68	Structural annotation	NF007257	NA	NA
UHGV-0130155_69	PHROG	phrog_17456	NA	unknown function
UHGV-0130155_71	PHROG	phrog_9710	NA	unknown function
UHGV-0130155_71	eggNOG-mapper	449673.BACSTE_02223	NA	NA
UHGV-0130155_73	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0130155_73	PHROG	phrog_1	integrase	integration and excision
UHGV-0130155_73	UniRef90	UniRef90_A0A3R6G6V0	Transposase	NA
UHGV-0130155_73	eggNOG-mapper	449673.BACSTE_02226	Belongs to the 'phage' integrase family	NA
UHGV-0130155_73	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0130155_73	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0130155_73	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA