UHGV-0130215

Genome information

Genome length 34,544 bps

CDS count 62

Completeness 93.84% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130215
vOTU ID	vOTU-061864
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_341524
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.99
Jumbo phage	No

Genome content
Genome length	34,544 bps
GC content	59.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.57%
Average CDS length	518.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130215_1	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0130215_1	Structural annotation	PF10618	NA	NA
UHGV-0130215_5	PHROG	phrog_6918	holin	lysis
UHGV-0130215_5	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0130215_5	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0130215_5	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0130215_5	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0130215_6	PHROG	phrog_14030	NA	unknown function
UHGV-0130215_6	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0130215_6	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0130215_6	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0130215_9	PHROG	phrog_16490	NA	unknown function
UHGV-0130215_9	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0130215_10	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0130215_11	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0130215_11	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0130215_12	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0130215_12	PHROG	phrog_95	integrase	integration and excision
UHGV-0130215_12	UniRef90	UniRef90_G9YSD9	Resolvase protein	NA
UHGV-0130215_12	eggNOG-mapper	1408437.JNJN01000002_gene1420	Resolvase, N terminal domain	NA
UHGV-0130215_12	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0130215_12	Pfam	PF07508	Recombinase	Recombinase
UHGV-0130215_12	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0130215_12	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0130215_12	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0130215_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130215_13	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0130215_13	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0130215_14	PHROG	phrog_10292	NA	unknown function
UHGV-0130215_14	UniRef90	UniRef90_UPI00101CA94E	TM2 domain-containing protein	NA
UHGV-0130215_14	eggNOG-mapper	1198452.Jab_1c20720	TM2 domain	NA
UHGV-0130215_14	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0130215_14	Pfam	PF05154	TM2 domain	TM2
UHGV-0130215_14	COG	COG2314	NA	NA
UHGV-0130215_15	eggNOG-mapper	552398.HMPREF0866_02158	NOG18738 non supervised orthologous group	NA
UHGV-0130215_15	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0130215_15	Structural annotation	PF02805	NA	NA
UHGV-0130215_17	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0130215_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0130215_17	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0130215_17	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0130215_17	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0130215_17	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0130215_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0130215_17	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0130215_20	Structural annotation	PF10548	NA	NA
UHGV-0130215_22	Structural annotation	NF041247	NA	NA
UHGV-0130215_23	Structural annotation	PF05082	NA	NA
UHGV-0130215_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0130215_27	UniRef90	UniRef90_A0A1Q6JI14	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0130215_27	eggNOG-mapper	1410628.JNKS01000054_gene544	NA	NA
UHGV-0130215_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0130215_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0130215_27	Structural annotation	PF01507, MF_01161, NF006327, COG0175	NA	NA
UHGV-0130215_28	PHROG	phrog_3136	NA	unknown function
UHGV-0130215_28	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0130215_28	eggNOG-mapper	717772.THIAE_09670	ASCH	NA
UHGV-0130215_28	Pfam	PF04266	ASCH domain	ASCH
UHGV-0130215_28	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0130215_28	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0130215_29	PHROG	phrog_38832	NA	unknown function
UHGV-0130215_29	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0130215_31	PHROG	phrog_32087	NA	unknown function
UHGV-0130215_31	UniRef90	UniRef90_A0A4D7AZG9	NA	NA
UHGV-0130215_31	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-0130215_31	Pfam	PF06356	NA	DUF1064
UHGV-0130215_31	Structural annotation	PF06356	NA	NA
UHGV-0130215_33	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130215_33	eggNOG-mapper	411467.BACCAP_02633	NA	NA
UHGV-0130215_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0130215_38	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0130215_38	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0130215_39	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0130215_39	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0130215_40	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130215_40	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0130215_40	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0130215_40	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0130215_41	PHROG	phrog_1066	NA	unknown function
UHGV-0130215_41	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0130215_41	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0130215_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0130215_42	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-0130215_42	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0130215_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0130215_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0130215_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0130215_42	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0130215_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-0130215_43	UniRef90	UniRef90_C4GAS6	Putative phage portal protein, HK97 family	NA
UHGV-0130215_43	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0130215_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0130215_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0130215_43	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0130215_44	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0130215_44	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0130215_44	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0130215_44	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0130215_44	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0130215_44	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0130215_44	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0130215_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-0130215_45	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0130215_45	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0130215_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0130215_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0130215_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0130215_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0130215_46	PHROG	phrog_5223	neck protein	connector
UHGV-0130215_46	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-0130215_46	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-0130215_47	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0130215_47	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-0130215_47	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0130215_47	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0130215_47	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0130215_47	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0130215_47	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0130215_48	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0130215_48	Structural annotation	PF05657	NA	NA
UHGV-0130215_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0130215_49	Structural annotation	TIGR01725	NA	NA
UHGV-0130215_50	PHROG	phrog_88	major tail protein	tail
UHGV-0130215_50	UniRef90	UniRef90_UPI000BA43BBF	major tail protein	NA
UHGV-0130215_50	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0130215_50	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0130215_50	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0130215_51	Structural annotation	PF11836	NA	NA
UHGV-0130215_53	PHROG	phrog_33680	NA	unknown function
UHGV-0130215_53	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0130215_53	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0130215_53	COG	COG5283	Phage-related tail protein	NA
UHGV-0130215_53	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0130215_54	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0130215_54	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0130215_54	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0130215_54	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0130215_55	PHROG	phrog_26795	NA	unknown function
UHGV-0130215_55	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-0130215_55	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0130215_56	Structural annotation	PF18614, MF_00085, NF003076, COG0231	NA	NA
UHGV-0130215_58	Structural annotation	PF10651	NA	NA
UHGV-0130215_60	PHROG	phrog_10898	NA	unknown function
UHGV-0130215_60	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0130215_60	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0130215_60	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0130215_60	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0130215_61	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0130215_62	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0130215_62	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA