UHGV-0130231

Genome information

Genome length 33,948 bps

CDS count 51

Completeness 85.27% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130231
vOTU ID	vOTU-029425
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_334705
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.28
Jumbo phage	No

Genome content
Genome length	33,948 bps
GC content	45.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.38%
Average CDS length	619.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130231_1	PHROG	phrog_5717	tail protein	tail
UHGV-0130231_1	UniRef90	UniRef90_A0A1Q3S3W5	Collar domain-containing protein	NA
UHGV-0130231_1	eggNOG-mapper	1262539.V9LYY4_9CAUD	virus tail, fiber	NA
UHGV-0130231_2	PHROG	phrog_1101	tail protein	tail
UHGV-0130231_2	UniRef90	UniRef90_H1CYW4	Phage-tail_3 domain-containing protein	NA
UHGV-0130231_2	eggNOG-mapper	742743.HMPREF9453_00552	Putative phage tail protein	NA
UHGV-0130231_2	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0130231_2	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0130231_2	Structural annotation	PF13550, NF040662, COG4733	NA	NA
UHGV-0130231_3	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0130231_3	PHROG	phrog_329	minor tail protein	tail
UHGV-0130231_3	UniRef90	UniRef90_H1CYW5	NlpC/P60 domain-containing protein	NA
UHGV-0130231_3	eggNOG-mapper	1232428.CAVO010000021_gene793	NlpC/P60 family	NA
UHGV-0130231_3	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0130231_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0130231_3	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0130231_4	PHROG	phrog_778	tail assembly protein	tail
UHGV-0130231_4	UniRef90	UniRef90_R6AUE0	Conserved domain protein	NA
UHGV-0130231_4	eggNOG-mapper	742743.HMPREF9453_00554	NA	NA
UHGV-0130231_4	Pfam	PF09931	NA	DUF2163
UHGV-0130231_4	COG	COG5449	NA	NA
UHGV-0130231_4	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0130231_5	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0130231_5	UniRef90	UniRef90_C9LPA8	TIGR02217 family protein	NA
UHGV-0130231_5	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0130231_5	Pfam	PF09343	NA	DUF2460
UHGV-0130231_5	COG	COG5448	NA	NA
UHGV-0130231_5	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0130231_6	PHROG	phrog_12798	NA	unknown function
UHGV-0130231_6	UniRef90	UniRef90_R6WQ18	Tape measure domain-containing protein	NA
UHGV-0130231_6	eggNOG-mapper	2754.EH55_13250	tape measure	NA
UHGV-0130231_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0130231_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0130231_6	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0130231_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0130231_8	eggNOG-mapper	1123288.SOV_2c03540	NA	NA
UHGV-0130231_8	Structural annotation	PF19591	NA	NA
UHGV-0130231_9	PHROG	phrog_1407	major tail protein	tail
UHGV-0130231_9	UniRef90	UniRef90_R6X5G0	Phage major tail protein TP901-1 family	NA
UHGV-0130231_9	eggNOG-mapper	568816.Acin_1911	Phage tail tube protein	NA
UHGV-0130231_9	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0130231_9	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0130231_9	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0130231_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0130231_10	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0130231_10	eggNOG-mapper	1280706.AUJE01000003_gene2256	NA	NA
UHGV-0130231_10	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0130231_11	eggNOG-mapper	568816.Acin_1233	NA	NA
UHGV-0130231_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0130231_12	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0130231_12	eggNOG-mapper	568816.Acin_1234	NA	NA
UHGV-0130231_12	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0130231_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0130231_13	UniRef90	UniRef90_R6WWZ7	Gp7	NA
UHGV-0130231_13	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-0130231_13	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0130231_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0130231_14	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0130231_14	Structural annotation	PF06810	NA	NA
UHGV-0130231_16	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0130231_16	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0130231_16	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0130231_17	PHROG	phrog_145	portal protein	head and packaging
UHGV-0130231_17	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0130231_17	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0130231_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0130231_18	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0130231_18	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0130231_18	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0130231_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0130231_18	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0130231_18	COG	COG5410	NA	NA
UHGV-0130231_18	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0130231_19	PHROG	phrog_2412	NA	unknown function
UHGV-0130231_19	UniRef90	UniRef90_UPI001106D0BC	KGG domain-containing protein	NA
UHGV-0130231_19	eggNOG-mapper	556268.OFAG_00320	NA	NA
UHGV-0130231_20	UniRef90	UniRef90_R6X5I6	PhageMetallopep domain-containing protein	NA
UHGV-0130231_20	eggNOG-mapper	1123288.SOV_2c10530	NA	NA
UHGV-0130231_20	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0130231_20	Structural annotation	PF18894, COG4900	NA	NA
UHGV-0130231_21	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-0130231_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0130231_22	UniRef90	UniRef90_R6WQ64	Sigma-70 region 4 domain protein	NA
UHGV-0130231_22	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0130231_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0130231_22	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0130231_23	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0130231_23	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0130231_23	eggNOG-mapper	1511.CLOST_1536	NA	NA
UHGV-0130231_23	Pfam	PF06356	NA	DUF1064
UHGV-0130231_23	Structural annotation	PF06356	NA	NA
UHGV-0130231_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0130231_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130231_25	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0130231_25	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0130231_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0130231_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0130231_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0130231_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0130231_25	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0130231_26	Structural annotation	NF011854	NA	NA
UHGV-0130231_29	PHROG	phrog_236	nucleotide kinase	other
UHGV-0130231_29	UniRef90	UniRef90_U7UMX2	PF11753 family protein	NA
UHGV-0130231_29	eggNOG-mapper	1111454.HMPREF1250_1038	NA	NA
UHGV-0130231_29	Pfam	PF11753	NA	DUF3310
UHGV-0130231_32	eggNOG-mapper	760568.Desku_0913	NA	NA
UHGV-0130231_35	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0130231_35	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0130231_35	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0130231_35	eggNOG-mapper	796942.HMPREF9623_00441	NA	NA
UHGV-0130231_35	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0130231_35	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0130231_35	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0130231_35	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0130231_36	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0130231_36	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0130231_36	eggNOG-mapper	1035189.HMPREF9954_1960	Replication initiation and membrane attachment	NA
UHGV-0130231_36	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0130231_36	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0130231_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0130231_36	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0130231_37	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0130231_37	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0130231_37	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0130231_38	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130231_38	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0130231_38	eggNOG-mapper	69279.BG36_21015	protein involved in exopolysaccharide biosynthesis	NA
UHGV-0130231_38	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0130231_38	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0130231_39	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0130231_39	UniRef90	UniRef90_R6WX74	Siphovirus family protein	NA
UHGV-0130231_39	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0130231_39	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0130231_39	Structural annotation	PF05565	NA	NA
UHGV-0130231_41	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0130231_41	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0130231_42	UniRef90	UniRef90_R6WX79	DNA binding domain excisionase family protein	NA
UHGV-0130231_42	eggNOG-mapper	318464.IO99_13850	Helix-turn-helix domain	NA
UHGV-0130231_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0130231_42	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0130231_43	Structural annotation	PF21441	NA	NA
UHGV-0130231_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0130231_46	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0130231_46	UniRef90	UniRef90_D9SWH3	Prophage antirepressor	NA
UHGV-0130231_46	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0130231_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0130231_46	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0130231_46	COG	COG3617	Prophage antirepressor	NA
UHGV-0130231_46	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0130231_47	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0130231_47	UniRef90	UniRef90_A0A4R1PX28	DNA-binding XRE family transcriptional regulator	NA
UHGV-0130231_47	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-0130231_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130231_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0130231_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0130231_48	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0130231_48	UniRef90	UniRef90_A0A173S2A0	HTH cro/C1-type domain-containing protein	NA
UHGV-0130231_48	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0130231_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0130231_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0130231_49	PHROG	phrog_19315	NA	unknown function
UHGV-0130231_49	UniRef90	UniRef90_A0A4P6BJ23	Peptidase_M78 domain-containing protein	NA
UHGV-0130231_49	eggNOG-mapper	1280706.AUJE01000010_gene629	NA	NA
UHGV-0130231_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0130231_49	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0130231_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0130231_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0130231_50	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0130231_50	UniRef90	UniRef90_R6XZB6	Putative abortive infection bacteriophage resistance related protein	NA
UHGV-0130231_50	eggNOG-mapper	927704.SELR_16790	Abi-like protein	NA
UHGV-0130231_50	PADLOC	AbiD	AbiD	Abi
UHGV-0130231_50	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0130231_50	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0130231_50	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0130231_51	KOfam	K14059	int; integrase	NA
UHGV-0130231_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0130231_51	UniRef90	UniRef90_R6X5Q1	Prophage LambdaBa02 site-specific recombinase phage integrase family	NA
UHGV-0130231_51	eggNOG-mapper	478749.BRYFOR_07566	Belongs to the 'phage' integrase family	NA
UHGV-0130231_51	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0130231_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0130231_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130231_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0130231_51	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA