UHGV-0130239

Genome information

Genome length 43,040 bps

CDS count 61

Completeness 68.36% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130239
vOTU ID	vOTU-072555
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_334701
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	68.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.46
Jumbo phage	No

Genome content
Genome length	43,040 bps
GC content	46.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.21%
Average CDS length	647.12 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130239_1	KOfam	K04487	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	NA
UHGV-0130239_1	PHROG	phrog_12787	NA	unknown function
UHGV-0130239_1	UniRef90	UniRef90_A0A395VB68	Cysteine desulfurase	NA
UHGV-0130239_1	eggNOG-mapper	585394.RHOM_05125	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	NA
UHGV-0130239_1	PADLOC	DndA_00001	DndA	DND
UHGV-0130239_1	Pfam	PF00266	Aminotransferase class-V	Aminotran_5
UHGV-0130239_1	NCBIFam	NF002806.0	IscS subfamily cysteine desulfurase	NA
UHGV-0130239_1	COG	COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	NA
UHGV-0130239_1	Structural annotation	PF00266, MF_00331, TIGR03403, COG1104	NA	NA
UHGV-0130239_3	eggNOG-mapper	1408312.JNJS01000002_gene176	HAMP domain	NA
UHGV-0130239_3	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0130239_4	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0130239_4	PHROG	phrog_7	endolysin	lysis
UHGV-0130239_4	UniRef90	UniRef90_A0A6L6L979	Lysozyme	NA
UHGV-0130239_4	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0130239_4	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0130239_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0130239_4	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0130239_4	HAMAP	MF_04110	Endolysin	NA
UHGV-0130239_4	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0130239_5	PHROG	phrog_443	holin	lysis
UHGV-0130239_5	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0130239_5	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0130239_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0130239_5	Structural annotation	PF16945	NA	NA
UHGV-0130239_6	PHROG	phrog_1863	NA	unknown function
UHGV-0130239_6	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0130239_7	PHROG	phrog_17196	kinase	other
UHGV-0130239_7	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0130239_7	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0130239_8	PHROG	phrog_18190	NA	unknown function
UHGV-0130239_8	UniRef90	UniRef90_UPI001C01E293	tail fiber domain-containing protein	NA
UHGV-0130239_8	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0130239_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0130239_8	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0130239_9	PHROG	phrog_1194	NA	unknown function
UHGV-0130239_9	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0130239_9	Pfam	PF20458	NA	DUF6711
UHGV-0130239_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0130239_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0130239_10	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0130239_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0130239_11	PHROG	phrog_706	NA	unknown function
UHGV-0130239_11	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0130239_11	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0130239_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0130239_11	Structural annotation	PF06854	NA	NA
UHGV-0130239_12	PHROG	phrog_11299	NA	unknown function
UHGV-0130239_12	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0130239_12	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0130239_12	Pfam	PF20378	NA	DUF6673
UHGV-0130239_12	Structural annotation	PF10666	NA	NA
UHGV-0130239_13	PHROG	phrog_3099	NA	unknown function
UHGV-0130239_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0130239_14	PHROG	phrog_3266	tail completion	connector
UHGV-0130239_14	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0130239_14	Structural annotation	PF12691	NA	NA
UHGV-0130239_15	PHROG	phrog_3366	NA	unknown function
UHGV-0130239_15	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0130239_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0130239_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0130239_17	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0130239_18	PHROG	phrog_283	major head protein	head and packaging
UHGV-0130239_18	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0130239_18	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0130239_18	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0130239_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0130239_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0130239_19	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0130239_19	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0130239_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0130239_20	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0130239_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0130239_21	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0130239_21	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-0130239_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0130239_21	COG	COG2369	NA	NA
UHGV-0130239_21	Structural annotation	PF06152	NA	NA
UHGV-0130239_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0130239_22	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0130239_22	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0130239_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0130239_22	Structural annotation	PF11114	NA	NA
UHGV-0130239_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0130239_24	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0130239_24	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0130239_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0130239_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130239_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0130239_25	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-0130239_25	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0130239_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0130239_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0130239_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0130239_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0130239_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0130239_26	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0130239_26	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-0130239_26	eggNOG-mapper	632245.CLP_1640	terminase, small subunit	NA
UHGV-0130239_26	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0130239_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0130239_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0130239_26	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0130239_27	UniRef90	UniRef90_UPI001C0249A7	ABC transporter ATP-binding protein	NA
UHGV-0130239_28	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0130239_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0130239_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0130239_29	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0130239_29	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0130239_29	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0130239_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0130239_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0130239_29	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0130239_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0130239_30	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0130239_30	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0130239_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0130239_30	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0130239_33	PHROG	phrog_874	NA	unknown function
UHGV-0130239_33	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0130239_33	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0130239_33	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0130239_34	KOfam	K12212	icmJ, dotN; intracellular multiplication protein IcmJ	NA
UHGV-0130239_34	PHROG	phrog_1571	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130239_34	UniRef90	UniRef90_A0A1Q9J7B4	HNHc domain-containing protein	NA
UHGV-0130239_34	eggNOG-mapper	702438.HMPREF9431_00759	HNH endonuclease	NA
UHGV-0130239_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0130239_34	Structural annotation	NF008448	NA	NA
UHGV-0130239_35	PHROG	phrog_20593	NA	unknown function
UHGV-0130239_36	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-0130239_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0130239_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0130239_40	UniRef90	UniRef90_UPI000E81B795	ATP-binding protein	NA
UHGV-0130239_40	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0130239_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0130239_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0130239_40	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0130239_41	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0130239_41	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-0130239_41	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0130239_41	Structural annotation	PF07106, PF07261, MF_01177, TIGR01714, TIGR01446, COG5529	NA	NA
UHGV-0130239_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0130239_42	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0130239_42	UniRef90	UniRef90_A0A1Q6UYH5	Endodeoxyribonuclease RusA	NA
UHGV-0130239_42	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0130239_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0130239_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0130239_42	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0130239_43	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0130239_43	UniRef90	UniRef90_A0A6N3H967	Bro-N domain-containing protein	NA
UHGV-0130239_43	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0130239_43	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0130239_43	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0130239_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0130239_43	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0130239_44	PHROG	phrog_7566	NA	unknown function
UHGV-0130239_44	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0130239_44	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0130239_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0130239_45	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0130239_45	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0130239_45	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0130239_46	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0130239_46	UniRef90	UniRef90_UPI001C031D02	ERF family protein	NA
UHGV-0130239_46	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0130239_46	Pfam	PF04404	ERF superfamily	ERF
UHGV-0130239_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0130239_46	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0130239_47	PHROG	phrog_674	NA	unknown function
UHGV-0130239_47	UniRef90	UniRef90_UPI001C01FE50	NA	NA
UHGV-0130239_47	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0130239_47	Pfam	PF07083	NA	DUF1351
UHGV-0130239_47	Structural annotation	PF07083	NA	NA
UHGV-0130239_52	UniRef90	UniRef90_A0A414RMV5	Lectin-1	NA
UHGV-0130239_52	Structural annotation	COG3296	NA	NA
UHGV-0130239_53	PHROG	phrog_6058	NA	unknown function
UHGV-0130239_53	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0130239_53	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0130239_54	PHROG	phrog_4621	NA	unknown function
UHGV-0130239_54	eggNOG-mapper	1415774.U728_1126	NA	NA
UHGV-0130239_56	UniRef90	UniRef90_UPI0015F7B8EC	XRE family transcriptional regulator	NA
UHGV-0130239_56	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-0130239_56	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0130239_57	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0130239_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0130239_57	UniRef90	UniRef90_A0A173S886	Transcriptional repressor DicA	NA
UHGV-0130239_57	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0130239_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130239_57	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0130239_57	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0130239_58	PHROG	phrog_87	metallo-protease	other
UHGV-0130239_58	UniRef90	UniRef90_UPI000E4A4CF7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0130239_58	eggNOG-mapper	411470.RUMGNA_03100	NA	NA
UHGV-0130239_58	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0130239_58	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0130239_59	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0130239_59	PHROG	phrog_19856	NA	unknown function
UHGV-0130239_59	UniRef90	UniRef90_UPI001C01FFC4	restriction endonuclease	NA
UHGV-0130239_59	eggNOG-mapper	397290.C810_01426	Restriction endonuclease	NA
UHGV-0130239_59	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0130239_59	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0130239_59	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0130239_59	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0130239_59	Structural annotation	PF04471, PF09397, NF003162, COG1787	NA	NA
UHGV-0130239_60	eggNOG-mapper	665956.HMPREF1032_03591	NA	NA
UHGV-0130239_61	KOfam	K14059	int; integrase	NA
UHGV-0130239_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0130239_61	UniRef90	UniRef90_UPI001C011E7D	tyrosine-type recombinase/integrase	NA
UHGV-0130239_61	eggNOG-mapper	931626.Awo_c31360	Phage integrase family	NA
UHGV-0130239_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130239_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0130239_61	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA