UHGV-0130354

Genome information

Genome length 39,824 bps

CDS count 62

Completeness 93.97% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130354
vOTU ID	vOTU-067769
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_330152
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.76
Jumbo phage	No

Genome content
Genome length	39,824 bps
GC content	54.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.88%
Average CDS length	593.52 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130354_1	PHROG	phrog_4433	NA	unknown function
UHGV-0130354_1	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0130354_1	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0130354_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0130354_1	Structural annotation	NF000318	NA	NA
UHGV-0130354_2	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0130354_2	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0130354_2	eggNOG-mapper	565664.EFXG_01142	ORF6C domain	NA
UHGV-0130354_2	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0130354_2	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0130354_2	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0130354_2	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0130354_2	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-0130354_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0130354_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0130354_5	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0130354_5	eggNOG-mapper	1268072.PSAB_01325	Transcriptional regulator	NA
UHGV-0130354_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130354_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0130354_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0130354_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0130354_6	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0130354_6	eggNOG-mapper	198094.BA_3829	Helix-turn-helix XRE-family like proteins	NA
UHGV-0130354_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130354_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0130354_6	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0130354_7	Structural annotation	PF21715, NF008122, COG1846	NA	NA
UHGV-0130354_10	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0130354_10	UniRef90	UniRef90_UPI001876A0BB	Ltp family lipoprotein	NA
UHGV-0130354_10	eggNOG-mapper	428127.EUBDOL_01530	Host cell surface-exposed lipoprotein	NA
UHGV-0130354_10	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0130354_10	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0130354_10	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0130354_10	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0130354_12	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0130354_12	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0130354_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130354_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0130354_12	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0130354_13	KOfam	K14059	int; integrase	NA
UHGV-0130354_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0130354_13	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0130354_13	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0130354_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130354_13	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0130354_13	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0130354_15	Structural annotation	PF12510	NA	NA
UHGV-0130354_16	PHROG	phrog_20016	NA	unknown function
UHGV-0130354_16	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0130354_16	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0130354_16	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0130354_17	PHROG	phrog_16490	NA	unknown function
UHGV-0130354_17	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0130354_18	PHROG	phrog_22984	NA	unknown function
UHGV-0130354_19	PHROG	phrog_21718	NA	unknown function
UHGV-0130354_19	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0130354_20	PHROG	phrog_3754	NA	unknown function
UHGV-0130354_20	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-0130354_22	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0130354_22	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0130354_23	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130354_23	UniRef90	UniRef90_UPI001C0BF339	transcriptional regulator	NA
UHGV-0130354_23	eggNOG-mapper	742740.HMPREF9474_00071	NA	NA
UHGV-0130354_23	Pfam	PF00847	AP2 domain	AP2
UHGV-0130354_23	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0130354_26	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0130354_26	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0130354_26	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0130354_26	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0130354_27	PHROG	phrog_15303	NA	unknown function
UHGV-0130354_27	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0130354_29	KOfam	K07273	acm; lysozyme	NA
UHGV-0130354_29	PHROG	phrog_291	endolysin	lysis
UHGV-0130354_29	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0130354_29	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0130354_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0130354_29	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0130354_29	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0130354_30	PHROG	phrog_2310	NA	unknown function
UHGV-0130354_31	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0130354_31	COG	COG5492	NA	NA
UHGV-0130354_32	PHROG	phrog_3558	tail protein	tail
UHGV-0130354_32	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0130354_32	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0130354_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0130354_32	COG	COG4926	Phage-related protein	NA
UHGV-0130354_32	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0130354_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0130354_33	UniRef90	UniRef90_A0A6N3CFG4	Phage tail protein	NA
UHGV-0130354_33	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0130354_33	COG	COG4722	Phage-related protein YomH	NA
UHGV-0130354_33	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0130354_34	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0130354_34	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0130354_34	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0130354_34	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0130354_34	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0130354_34	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0130354_34	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0130354_37	PHROG	phrog_885	major tail protein	tail
UHGV-0130354_37	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0130354_37	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0130354_37	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0130354_37	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0130354_38	Structural annotation	PF13554	NA	NA
UHGV-0130354_39	PHROG	phrog_17977	NA	unknown function
UHGV-0130354_39	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0130354_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0130354_41	PHROG	phrog_544	major head protein	head and packaging
UHGV-0130354_41	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0130354_41	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0130354_41	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0130354_42	Structural annotation	PF06810	NA	NA
UHGV-0130354_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0130354_44	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0130354_44	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0130354_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0130354_44	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0130354_45	PHROG	phrog_21498	NA	unknown function
UHGV-0130354_45	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0130354_45	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0130354_45	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0130354_46	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0130354_46	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0130354_46	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0130354_46	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0130354_46	COG	COG2369	NA	NA
UHGV-0130354_46	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0130354_47	PHROG	phrog_64	portal protein	head and packaging
UHGV-0130354_47	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0130354_47	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0130354_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0130354_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0130354_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130354_48	PHROG	phrog_10250	NA	unknown function
UHGV-0130354_48	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0130354_48	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0130354_48	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0130354_48	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0130354_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0130354_48	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0130354_49	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0130354_49	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0130354_49	Structural annotation	PF04218	NA	NA
UHGV-0130354_50	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0130354_50	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0130354_50	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0130354_50	Pfam	PF07374	NA	DUF1492
UHGV-0130354_50	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0130354_52	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0130354_52	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0130354_52	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0130354_52	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0130354_52	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0130354_52	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0130354_52	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0130354_53	Structural annotation	TIGR04165	NA	NA
UHGV-0130354_54	PHROG	phrog_3136	NA	unknown function
UHGV-0130354_54	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0130354_54	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0130354_54	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0130354_54	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0130354_55	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0130354_55	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0130354_55	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0130354_55	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0130354_55	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0130354_57	Structural annotation	PF11417	NA	NA
UHGV-0130354_58	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0130354_58	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0130354_58	UniRef90	UniRef90_A0A844D5V0	DnaD domain protein	NA
UHGV-0130354_58	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0130354_58	Pfam	PF19808	NA	DUF6291
UHGV-0130354_58	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0130354_58	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0130354_58	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0130354_59	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-0130354_59	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0130354_60	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0130354_60	UniRef90	UniRef90_A0A3A6EAW6	Phage recombination protein Bet	NA
UHGV-0130354_60	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0130354_60	Pfam	PF03837	RecT family	RecT
UHGV-0130354_60	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0130354_60	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0130354_60	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0130354_61	PHROG	phrog_674	NA	unknown function
UHGV-0130354_61	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-0130354_61	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-0130354_61	Pfam	PF07083	NA	DUF1351
UHGV-0130354_61	Structural annotation	PF07083	NA	NA
UHGV-0130354_62	Structural annotation	PF14120	NA	NA