UHGV-0130359

Genome information

Genome length 39,800 bps

CDS count 60

Completeness 93.64% (high-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130359
vOTU ID	vOTU-067771
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_313384
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.07
Jumbo phage	No

Genome content
Genome length	39,800 bps
GC content	47.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.00%
Average CDS length	600.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130359_1	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0130359_1	UniRef90	UniRef90_R6BA25	HTH_59 domain-containing protein	NA
UHGV-0130359_1	eggNOG-mapper	1401067.HMPREF0872_03330	NA	NA
UHGV-0130359_1	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0130359_1	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0130359_3	PHROG	phrog_5763	NA	unknown function
UHGV-0130359_3	UniRef90	UniRef90_A0A1X9T226	Putative membrane protein	NA
UHGV-0130359_3	eggNOG-mapper	944564.HMPREF9200_0609	NA	NA
UHGV-0130359_4	PHROG	phrog_1281	NA	unknown function
UHGV-0130359_4	UniRef90	UniRef90_A0A417A414	NA	NA
UHGV-0130359_4	eggNOG-mapper	1000569.HMPREF1040_1612	NA	NA
UHGV-0130359_4	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0130359_4	COG	COG3600	NA	NA
UHGV-0130359_4	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0130359_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0130359_6	PHROG	phrog_291	endolysin	lysis
UHGV-0130359_6	UniRef90	UniRef90_R6AN85	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0130359_6	eggNOG-mapper	1273103.NM10_01741	Glycosyl hydrolase family 25	NA
UHGV-0130359_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0130359_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0130359_6	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0130359_11	KOfam	K14059	int; integrase	NA
UHGV-0130359_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0130359_11	UniRef90	UniRef90_A0A1G5VJA4	Site-specific recombinase XerD	NA
UHGV-0130359_11	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0130359_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130359_11	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0130359_11	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0130359_12	eggNOG-mapper	1273103.NM10_08099	NA	NA
UHGV-0130359_12	Structural annotation	NF012201	NA	NA
UHGV-0130359_13	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0130359_13	UniRef90	UniRef90_UPI000486D8B9	phage tail protein	NA
UHGV-0130359_13	eggNOG-mapper	690850.Desaf_3543	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0130359_13	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0130359_13	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0130359_13	Structural annotation	PF12571	NA	NA
UHGV-0130359_14	PHROG	phrog_521	tail protein	tail
UHGV-0130359_14	UniRef90	UniRef90_A0A848EVX3	NA	NA
UHGV-0130359_14	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-0130359_14	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0130359_14	COG	COG3778	NA	NA
UHGV-0130359_14	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0130359_15	PHROG	phrog_6	baseplate protein	tail
UHGV-0130359_15	UniRef90	UniRef90_U7UJ67	Baseplate J-like protein	NA
UHGV-0130359_15	eggNOG-mapper	1111454.HMPREF1250_0199	Baseplate J-like protein	NA
UHGV-0130359_15	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0130359_15	COG	COG3299	NA	NA
UHGV-0130359_15	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0130359_16	PHROG	phrog_120	baseplate protein	tail
UHGV-0130359_16	UniRef90	UniRef90_A0A0J6WX87	NA	NA
UHGV-0130359_16	eggNOG-mapper	1273103.NM10_01004	NA	NA
UHGV-0130359_16	Pfam	PF10934	NA	DUF2634
UHGV-0130359_16	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0130359_17	PHROG	phrog_579	NA	unknown function
UHGV-0130359_17	UniRef90	UniRef90_A0A413QUA5	NA	NA
UHGV-0130359_17	eggNOG-mapper	1273103.NM10_01009	NA	NA
UHGV-0130359_17	Pfam	PF10844	NA	DUF2577
UHGV-0130359_17	Structural annotation	PF10844	NA	NA
UHGV-0130359_18	PHROG	phrog_400	tail protein	tail
UHGV-0130359_18	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0130359_18	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0130359_18	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0130359_18	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0130359_19	PHROG	phrog_380	endolysin	lysis
UHGV-0130359_19	UniRef90	UniRef90_A0A2G5X817	LysM domain-containing protein	NA
UHGV-0130359_19	eggNOG-mapper	1273103.NM10_01019	LysM domain	NA
UHGV-0130359_19	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0130359_19	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0130359_20	PHROG	phrog_16692	NA	unknown function
UHGV-0130359_20	UniRef90	UniRef90_U7ULG1	Tail tape measure protein, TIGR01760 family	NA
UHGV-0130359_20	eggNOG-mapper	1111454.HMPREF1250_0194	Phage-related minor tail protein	NA
UHGV-0130359_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0130359_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0130359_20	COG	COG5283	Phage-related tail protein	NA
UHGV-0130359_20	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0130359_21	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0130359_21	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0130359_21	eggNOG-mapper	1111454.HMPREF1250_0193	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0130359_21	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0130359_21	Structural annotation	PF08890	NA	NA
UHGV-0130359_22	PHROG	phrog_365	tail protein	tail
UHGV-0130359_22	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0130359_22	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0130359_22	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0130359_22	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0130359_23	PHROG	phrog_1480	tail sheath	tail
UHGV-0130359_23	UniRef90	UniRef90_A0A269TCE8	Phage tail sheath protein	NA
UHGV-0130359_23	eggNOG-mapper	1111454.HMPREF1250_0191	Phage tail sheath C-terminal domain	NA
UHGV-0130359_23	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0130359_23	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0130359_23	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0130359_24	PHROG	phrog_525	NA	unknown function
UHGV-0130359_24	UniRef90	UniRef90_UPI0011A26FBC	NA	NA
UHGV-0130359_24	eggNOG-mapper	883156.HMPREF9282_00956	NA	NA
UHGV-0130359_24	Pfam	PF20765	NA	DUF6838
UHGV-0130359_24	Structural annotation	PF20765	NA	NA
UHGV-0130359_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0130359_25	UniRef90	UniRef90_A0A1G9QVC1	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0130359_25	eggNOG-mapper	1273103.NM10_01049	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0130359_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0130359_25	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0130359_26	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0130359_26	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0130359_26	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0130359_27	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0130359_27	eggNOG-mapper	1111454.HMPREF1250_0188	NA	NA
UHGV-0130359_30	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0130359_30	UniRef90	UniRef90_UPI001F405464	minor capsid protein	NA
UHGV-0130359_30	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0130359_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0130359_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0130359_30	COG	COG2369	NA	NA
UHGV-0130359_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0130359_31	PHROG	phrog_247	major head protein	head and packaging
UHGV-0130359_31	UniRef90	UniRef90_S7HTI1	Coat protein	NA
UHGV-0130359_31	eggNOG-mapper	1273103.NM10_01069	NA	NA
UHGV-0130359_31	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0130359_31	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0130359_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0130359_32	UniRef90	UniRef90_A0A0J6WUK7	Phage minor structural protein GP20	NA
UHGV-0130359_32	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0130359_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0130359_32	Structural annotation	PF06810	NA	NA
UHGV-0130359_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0130359_33	UniRef90	UniRef90_S7J9T3	SPP1 family phage portal protein	NA
UHGV-0130359_33	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0130359_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0130359_33	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0130359_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0130359_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130359_34	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0130359_34	UniRef90	UniRef90_A0A3B9DUU0	PBSX family phage terminase large subunit	NA
UHGV-0130359_34	eggNOG-mapper	1000569.HMPREF1040_0200	Phage terminase, large subunit	NA
UHGV-0130359_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0130359_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0130359_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0130359_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0130359_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0130359_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0130359_35	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0130359_35	UniRef90	UniRef90_R6AGU2	Phage terminase small subunit	NA
UHGV-0130359_35	eggNOG-mapper	1321779.HMPREF1984_01312	terminase small subunit	NA
UHGV-0130359_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0130359_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0130359_35	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0130359_36	PHROG	phrog_3243	NA	unknown function
UHGV-0130359_36	eggNOG-mapper	568816.Acin_1295	NA	NA
UHGV-0130359_36	Structural annotation	PF17185, MF_00075, NF007814, COG0361	NA	NA
UHGV-0130359_37	Structural annotation	PF08281, TIGR01636, COG2739	NA	NA
UHGV-0130359_38	UniRef90	UniRef90_A0A3B9DVA1	MYND-type domain-containing protein	NA
UHGV-0130359_39	PHROG	phrog_16126	NA	unknown function
UHGV-0130359_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0130359_40	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0130359_40	UniRef90	UniRef90_R6AUC5	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0130359_40	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0130359_40	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0130359_40	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0130359_40	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0130359_43	Structural annotation	PF05406	NA	NA
UHGV-0130359_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0130359_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130359_44	UniRef90	UniRef90_A0A8D5A5X5	Single-stranded DNA-binding protein	NA
UHGV-0130359_44	eggNOG-mapper	1296662.S5MUT4_9CAUD	Single-strand binding protein family	NA
UHGV-0130359_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0130359_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0130359_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0130359_44	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0130359_45	PHROG	phrog_9804	NA	unknown function
UHGV-0130359_45	UniRef90	UniRef90_A0A0R3JUV7	Loader and inhibitor of phage G40P	NA
UHGV-0130359_45	eggNOG-mapper	1273103.NM10_01154	NA	NA
UHGV-0130359_45	Structural annotation	PF11417	NA	NA
UHGV-0130359_46	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0130359_46	UniRef90	UniRef90_R2XQX5	DnaD domain-containing protein	NA
UHGV-0130359_46	eggNOG-mapper	1321778.HMPREF1982_02671	DnaD domain protein	NA
UHGV-0130359_46	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0130359_46	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0130359_47	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0130359_47	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0130359_47	UniRef90	UniRef90_S7HTJ9	RecT protein	NA
UHGV-0130359_47	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-0130359_47	Pfam	PF03837	RecT family	RecT
UHGV-0130359_47	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0130359_47	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0130359_47	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0130359_48	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130359_48	UniRef90	UniRef90_A0A134CHS9	YqaJ viral recombinase family protein	NA
UHGV-0130359_48	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-0130359_48	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0130359_48	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0130359_48	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0130359_48	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0130359_56	UniRef90	UniRef90_A0A3B9DWG3	XRE family transcriptional regulator	NA
UHGV-0130359_56	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0130359_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130359_56	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0130359_57	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0130359_57	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0130359_57	UniRef90	UniRef90_A0A3B9DVE9	Repressor LexA	NA
UHGV-0130359_57	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-0130359_57	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0130359_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130359_57	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0130359_57	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0130359_57	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0130359_58	UniRef90	UniRef90_UPI001D12080A	DNA-binding protein	NA
UHGV-0130359_58	eggNOG-mapper	585501.HMPREF6123_2325	bacterial-type flagellum assembly	NA
UHGV-0130359_58	COG	COG1256	Flagellar hook-associated protein FlgK	NA
UHGV-0130359_58	Structural annotation	PF10543, NF033622, COG3943	NA	NA
UHGV-0130359_59	KOfam	K07341	doc; death on curing protein	NA
UHGV-0130359_59	PHROG	phrog_577	Doc-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0130359_59	UniRef90	UniRef90_A0A1E9AU30	Death-on-curing protein	NA
UHGV-0130359_59	eggNOG-mapper	927704.SELR_20830	Fic/DOC family	NA
UHGV-0130359_59	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0130359_59	COG	COG3654	Prophage maintenance system killer protein	NA
UHGV-0130359_59	Structural annotation	TIGR01550, COG3654	NA	NA
UHGV-0130359_60	KOfam	K14059	int; integrase	NA
UHGV-0130359_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0130359_60	UniRef90	UniRef90_A0A3B9DUU2	Tyr recombinase domain-containing protein	NA
UHGV-0130359_60	eggNOG-mapper	1262914.BN533_00811	Belongs to the 'phage' integrase family	NA
UHGV-0130359_60	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0130359_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130359_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA