UHGV-0130362

Genome information

Genome length 57,111 bps

CDS count 99

Completeness 99.09% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130362
vOTU ID	vOTU-062423
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_336721
BioSample	SAMN00791987
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.09
Jumbo phage	No

Genome content
Genome length	57,111 bps
GC content	48.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	99
CDS density	88.25%
Average CDS length	511.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130362_4	PHROG	phrog_16490	NA	unknown function
UHGV-0130362_4	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0130362_5	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0130362_6	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0130362_8	PHROG	phrog_7070	NA	unknown function
UHGV-0130362_9	Structural annotation	NF010188	NA	NA
UHGV-0130362_10	Structural annotation	PF07878	NA	NA
UHGV-0130362_12	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0130362_12	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0130362_12	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0130362_12	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0130362_12	Pfam	PF13614	AAA domain	AAA_31
UHGV-0130362_12	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0130362_12	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0130362_13	PHROG	phrog_3032	NA	unknown function
UHGV-0130362_14	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0130362_14	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0130362_14	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0130362_14	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0130362_14	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0130362_14	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0130362_14	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0130362_15	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0130362_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130362_15	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0130362_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0130362_18	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0130362_18	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0130362_18	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0130362_18	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0130362_18	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0130362_19	UniRef90	UniRef90_UPI001D011E8C	XRE family transcriptional regulator	NA
UHGV-0130362_19	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0130362_19	Structural annotation	TIGR03070	NA	NA
UHGV-0130362_20	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0130362_20	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0130362_20	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0130362_20	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0130362_20	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0130362_20	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0130362_20	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0130362_20	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0130362_20	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0130362_21	Structural annotation	PF10922	NA	NA
UHGV-0130362_22	Structural annotation	TIGR03826	NA	NA
UHGV-0130362_23	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0130362_23	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0130362_25	Structural annotation	PF14143	NA	NA
UHGV-0130362_26	eggNOG-mapper	1278306.KB906918_gene1274	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0130362_26	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0130362_26	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0130362_26	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0130362_28	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0130362_28	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0130362_28	Structural annotation	PF13451	NA	NA
UHGV-0130362_29	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0130362_29	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0130362_29	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0130362_29	Pfam	PF04404	ERF superfamily	ERF
UHGV-0130362_29	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0130362_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0130362_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130362_30	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0130362_30	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0130362_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0130362_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0130362_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0130362_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0130362_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0130362_31	PHROG	phrog_28936	NA	unknown function
UHGV-0130362_31	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0130362_31	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0130362_32	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0130362_32	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0130362_32	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0130362_32	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0130362_32	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0130362_32	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0130362_32	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0130362_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0130362_32	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0130362_34	PHROG	phrog_35094	NA	unknown function
UHGV-0130362_34	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0130362_35	Pfam	PF04448	NA	DUF551
UHGV-0130362_36	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0130362_36	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0130362_36	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0130362_36	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0130362_39	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0130362_43	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0130362_43	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0130362_43	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0130362_43	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0130362_43	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0130362_43	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0130362_43	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0130362_43	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0130362_44	Structural annotation	PF03465, COG2331	NA	NA
UHGV-0130362_48	PHROG	phrog_924	NA	unknown function
UHGV-0130362_48	UniRef90	UniRef90_A0A088C479	NA	NA
UHGV-0130362_48	Pfam	PF04448	NA	DUF551
UHGV-0130362_48	Structural annotation	NF041588	NA	NA
UHGV-0130362_49	Structural annotation	PF16677	NA	NA
UHGV-0130362_51	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0130362_51	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0130362_51	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0130362_51	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0130362_57	Structural annotation	NF041588	NA	NA
UHGV-0130362_60	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0130362_60	UniRef90	UniRef90_A0A412AV49	Restriction alleviation protein, Lar family	NA
UHGV-0130362_60	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0130362_60	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0130362_60	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0130362_60	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0130362_61	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0130362_61	Pfam	PF19808	NA	DUF6291
UHGV-0130362_61	Structural annotation	PF19808	NA	NA
UHGV-0130362_62	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0130362_62	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0130362_62	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0130362_62	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0130362_62	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0130362_62	COG	COG0305	Replicative DNA helicase	NA
UHGV-0130362_62	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0130362_65	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0130362_67	PHROG	phrog_14275	NA	unknown function
UHGV-0130362_67	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0130362_67	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0130362_67	Structural annotation	PF03843, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0130362_69	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0130362_69	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0130362_69	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0130362_69	eggNOG-mapper	416870.llmg_0797	ORF6C domain	NA
UHGV-0130362_69	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0130362_69	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0130362_69	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0130362_69	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-0130362_70	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0130362_72	KOfam	K21528	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	NA
UHGV-0130362_72	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0130362_72	UniRef90	UniRef90_A0A1H3G7A1	Site-specific DNA recombinase	NA
UHGV-0130362_72	eggNOG-mapper	931626.Awo_c01430	Resolvase, N terminal domain	NA
UHGV-0130362_72	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0130362_72	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0130362_72	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0130362_73	Structural annotation	NF009949	NA	NA
UHGV-0130362_76	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0130362_76	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0130362_76	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0130362_76	COG	COG5410	NA	NA
UHGV-0130362_76	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0130362_79	PHROG	phrog_64	portal protein	head and packaging
UHGV-0130362_79	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0130362_79	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0130362_79	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0130362_79	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0130362_81	PHROG	phrog_909	major head protein	head and packaging
UHGV-0130362_82	PHROG	phrog_29	major head protein	head and packaging
UHGV-0130362_82	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0130362_82	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0130362_82	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0130362_82	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0130362_83	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0130362_83	Structural annotation	TIGR01560	NA	NA
UHGV-0130362_84	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0130362_84	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0130362_85	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0130362_86	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0130362_87	UniRef90	UniRef90_UPI001D06C8CA	phage tail protein	NA
UHGV-0130362_87	eggNOG-mapper	1449342.JQMR01000001_gene990	Phage tail tube protein, TTP	NA
UHGV-0130362_87	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0130362_88	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0130362_88	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0130362_88	Pfam	PF16478	NA	DUF5055
UHGV-0130362_88	Structural annotation	PF16478	NA	NA
UHGV-0130362_89	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0130362_90	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0130362_90	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0130362_90	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0130362_90	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0130362_91	PHROG	phrog_1194	NA	unknown function
UHGV-0130362_91	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0130362_91	Pfam	PF20458	NA	DUF6711
UHGV-0130362_91	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0130362_92	PHROG	phrog_13879	NA	unknown function
UHGV-0130362_92	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0130362_92	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0130362_92	Pfam	PF19789	NA	DUF6273
UHGV-0130362_92	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0130362_93	PHROG	phrog_18725	NA	unknown function
UHGV-0130362_93	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0130362_94	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0130362_94	COG	COG5492	NA	NA
UHGV-0130362_95	PHROG	phrog_2310	NA	unknown function
UHGV-0130362_96	KOfam	K07273	acm; lysozyme	NA
UHGV-0130362_96	PHROG	phrog_291	endolysin	lysis
UHGV-0130362_96	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0130362_96	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0130362_96	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0130362_96	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0130362_96	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0130362_98	PHROG	phrog_15303	NA	unknown function
UHGV-0130362_99	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0130362_99	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0130362_99	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0130362_99	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0130362_99	Structural annotation	PF10651	NA	NA