UHGV-0130380

Genome information

Genome length 39,836 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130380
vOTU ID	vOTU-045922
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_311271
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.13
Jumbo phage	No

Genome content
Genome length	39,836 bps
GC content	52.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	89.95%
Average CDS length	537.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130380_1	PHROG	phrog_27197	NA	unknown function
UHGV-0130380_1	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0130380_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0130380_1	Structural annotation	NF007410	NA	NA
UHGV-0130380_5	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0130380_5	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0130380_5	Pfam	PF06378	NA	DUF1071
UHGV-0130380_5	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0130380_6	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130380_6	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0130380_6	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0130380_7	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0130380_7	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0130380_7	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0130380_7	Structural annotation	PF05772	NA	NA
UHGV-0130380_8	PHROG	phrog_7566	NA	unknown function
UHGV-0130380_8	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0130380_8	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0130380_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0130380_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130380_9	UniRef90	UniRef90_A0A1I5U1X5	Single-stranded DNA-binding protein	NA
UHGV-0130380_9	eggNOG-mapper	1235797.C816_01960	Single-strand binding protein family	NA
UHGV-0130380_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0130380_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0130380_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0130380_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0130380_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0130380_10	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0130380_10	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0130380_10	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0130380_12	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0130380_12	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0130380_12	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0130380_12	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0130380_12	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0130380_12	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0130380_12	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0130380_13	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0130380_14	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0130380_14	PHROG	phrog_200	lipoprotein	other
UHGV-0130380_14	UniRef90	UniRef90_UPI0010310848	prohibitin family protein	NA
UHGV-0130380_14	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-0130380_14	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0130380_14	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0130380_14	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0130380_15	UniRef90	UniRef90_UPI001E5B1F2B	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0130380_15	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0130380_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0130380_17	PHROG	phrog_22529	NA	unknown function
UHGV-0130380_17	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0130380_17	eggNOG-mapper	1410622.JNKY01000010_gene1282	3D domain	NA
UHGV-0130380_17	Pfam	PF06725	3D domain	3D
UHGV-0130380_17	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0130380_17	Structural annotation	PF06725, NF040670, COG3584	NA	NA
UHGV-0130380_18	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0130380_18	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0130380_18	UniRef90	UniRef90_D4K450	Methyltransferase	NA
UHGV-0130380_18	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0130380_18	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0130380_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0130380_18	COG	COG0863	DNA modification methylase	NA
UHGV-0130380_18	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0130380_21	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0130380_21	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0130380_24	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0130380_24	Structural annotation	TIGR01636	NA	NA
UHGV-0130380_27	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0130380_27	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0130380_27	Structural annotation	PF13542	NA	NA
UHGV-0130380_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130380_28	PHROG	phrog_10250	NA	unknown function
UHGV-0130380_28	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0130380_28	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0130380_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0130380_28	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0130380_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0130380_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0130380_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0130380_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0130380_29	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0130380_29	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0130380_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0130380_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0130380_31	PHROG	phrog_8680	NA	unknown function
UHGV-0130380_31	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0130380_31	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0130380_31	Pfam	PF14386	NA	DUF4417
UHGV-0130380_31	Structural annotation	PF14386	NA	NA
UHGV-0130380_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0130380_32	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0130380_32	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0130380_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0130380_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0130380_32	COG	COG2369	NA	NA
UHGV-0130380_32	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0130380_33	Structural annotation	PF06442, MF_01194, NF000331, COG4014	NA	NA
UHGV-0130380_34	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0130380_34	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0130380_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0130380_35	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130380_35	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-0130380_35	eggNOG-mapper	673376.F2VHW3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0130380_36	Structural annotation	PF18152	NA	NA
UHGV-0130380_37	eggNOG-mapper	476272.RUMHYD_02853	NA	NA
UHGV-0130380_37	Structural annotation	PF06810	NA	NA
UHGV-0130380_38	PHROG	phrog_544	major head protein	head and packaging
UHGV-0130380_38	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0130380_38	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0130380_38	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0130380_38	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0130380_40	PHROG	phrog_17977	NA	unknown function
UHGV-0130380_40	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0130380_40	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0130380_41	PHROG	phrog_17405	head protein	head and packaging
UHGV-0130380_41	Structural annotation	PF11367	NA	NA
UHGV-0130380_42	PHROG	phrog_885	major tail protein	tail
UHGV-0130380_42	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0130380_42	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0130380_42	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0130380_44	PHROG	phrog_7115	NA	unknown function
UHGV-0130380_44	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0130380_44	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0130380_44	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0130380_44	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0130380_45	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0130380_45	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0130380_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0130380_45	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0130380_46	UniRef90	UniRef90_A0A374UNT1	MtfA protein	NA
UHGV-0130380_46	eggNOG-mapper	877414.ATWA01000019_gene2049	NA	NA
UHGV-0130380_46	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0130380_47	PHROG	phrog_3558	tail protein	tail
UHGV-0130380_47	UniRef90	UniRef90_A0A810Q1Y2	Prophage_tail domain-containing protein	NA
UHGV-0130380_47	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0130380_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0130380_47	COG	COG4926	Phage-related protein	NA
UHGV-0130380_47	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0130380_48	PHROG	phrog_372	tail protein	tail
UHGV-0130380_48	UniRef90	UniRef90_A0A3E3E6C0	Pilus assembly protein	NA
UHGV-0130380_48	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-0130380_48	Pfam	PF05895	NA	DUF859
UHGV-0130380_48	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG5608	NA	NA
UHGV-0130380_49	PHROG	phrog_1863	NA	unknown function
UHGV-0130380_49	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0130380_50	PHROG	phrog_1129	holin	lysis
UHGV-0130380_50	UniRef90	UniRef90_UPI001EDED0D7	phage holin family protein	NA
UHGV-0130380_50	eggNOG-mapper	1007096.BAGW01000032_gene1582	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0130380_50	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0130380_50	Structural annotation	PF06946	NA	NA
UHGV-0130380_51	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0130380_51	PHROG	phrog_670	endolysin	lysis
UHGV-0130380_51	UniRef90	UniRef90_A0A252F607	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0130380_51	eggNOG-mapper	411463.EUBVEN_00418	Ami_2	NA
UHGV-0130380_51	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0130380_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0130380_51	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0130380_51	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0130380_53	PHROG	phrog_3754	NA	unknown function
UHGV-0130380_53	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0130380_54	PHROG	phrog_21718	NA	unknown function
UHGV-0130380_54	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0130380_55	PHROG	phrog_22984	NA	unknown function
UHGV-0130380_56	PHROG	phrog_16490	NA	unknown function
UHGV-0130380_56	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0130380_57	PHROG	phrog_20016	NA	unknown function
UHGV-0130380_57	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0130380_57	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0130380_57	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0130380_58	Structural annotation	PF12510	NA	NA
UHGV-0130380_59	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0130380_60	KOfam	K14059	int; integrase	NA
UHGV-0130380_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0130380_60	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0130380_60	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0130380_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130380_60	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0130380_60	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0130380_61	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0130380_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130380_61	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0130380_62	UniRef90	UniRef90_A0A3C1K3F5	HTH cro/C1-type domain-containing protein	NA
UHGV-0130380_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0130380_62	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0130380_64	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0130380_64	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0130380_64	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0130380_64	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0130380_65	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0130380_65	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0130380_67	PHROG	phrog_4433	NA	unknown function
UHGV-0130380_67	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0130380_67	COG	COG5164	Transcription elongation factor SPT5	NA