UHGV-0130426

Genome information

Genome length 36,240 bps

CDS count 52

Completeness 90.56% (high-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130426
vOTU ID	vOTU-065621
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_321215
BioSample	SAMN00792096
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.82
Jumbo phage	No

Genome content
Genome length	36,240 bps
GC content	43.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.59%
Average CDS length	664.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130426_1	PHROG	phrog_3364	NA	unknown function
UHGV-0130426_1	UniRef90	UniRef90_A0A417PV90	ATP-binding protein	NA
UHGV-0130426_1	eggNOG-mapper	1280663.ATVR01000003_gene186	NA	NA
UHGV-0130426_1	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0130426_1	Structural annotation	PF02518, PF01740, MF_00637, TIGR01925, TIGR00377, COG2172	NA	NA
UHGV-0130426_2	PHROG	phrog_5816	NA	unknown function
UHGV-0130426_2	UniRef90	UniRef90_A0A2H4J4X6	NA	NA
UHGV-0130426_2	eggNOG-mapper	1280663.ATVR01000003_gene187	NA	NA
UHGV-0130426_2	Pfam	PF14213	NA	DUF4325
UHGV-0130426_2	Structural annotation	PF14213	NA	NA
UHGV-0130426_3	Structural annotation	PF16767, COG5278	NA	NA
UHGV-0130426_4	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0130426_4	eggNOG-mapper	1179226.AJXO01000005_gene1853	Phage minor capsid protein 2	NA
UHGV-0130426_4	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0130426_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0130426_5	PHROG	phrog_87	metallo-protease	other
UHGV-0130426_5	UniRef90	UniRef90_A0A350VV99	Peptidase_M78 domain-containing protein	NA
UHGV-0130426_5	eggNOG-mapper	556261.HMPREF0240_01267	Zn peptidase	NA
UHGV-0130426_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0130426_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0130426_5	Structural annotation	PF06114	NA	NA
UHGV-0130426_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0130426_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0130426_6	UniRef90	UniRef90_A0A3C1X9T6	XRE family transcriptional regulator	NA
UHGV-0130426_6	eggNOG-mapper	1163671.JAGI01000002_gene3058	Helix-turn-helix domain protein	NA
UHGV-0130426_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130426_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0130426_6	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0130426_7	UniRef90	UniRef90_A0A1M7SN53	HTH cro/C1-type domain-containing protein	NA
UHGV-0130426_7	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0130426_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130426_7	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0130426_14	eggNOG-mapper	877424.ATWC01000016_gene168	NA	NA
UHGV-0130426_14	Pfam	PF20323	NA	DUF6618
UHGV-0130426_14	Structural annotation	PF20323	NA	NA
UHGV-0130426_16	Structural annotation	PF07875	NA	NA
UHGV-0130426_17	PHROG	phrog_32437	NA	unknown function
UHGV-0130426_17	UniRef90	UniRef90_A0A350VVB0	SLT domain-containing protein	NA
UHGV-0130426_17	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0130426_17	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0130426_17	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0130426_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0130426_19	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0130426_19	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0130426_20	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0130426_20	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0130426_20	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0130426_20	eggNOG-mapper	986075.CathTA2_0778	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0130426_20	Pfam	PF00075	RNase H	RNase_H
UHGV-0130426_20	COG	COG0328	Ribonuclease HI	NA
UHGV-0130426_20	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0130426_21	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-0130426_22	PHROG	phrog_4433	NA	unknown function
UHGV-0130426_22	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0130426_22	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0130426_22	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0130426_23	PHROG	phrog_8470	NA	unknown function
UHGV-0130426_23	UniRef90	UniRef90_UPI001D0E6B3F	PcfJ domain-containing protein	NA
UHGV-0130426_23	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-0130426_23	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0130426_23	Structural annotation	PF14284	NA	NA
UHGV-0130426_25	PHROG	phrog_15077	NA	unknown function
UHGV-0130426_25	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0130426_25	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0130426_25	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0130426_26	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0130426_26	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0130426_27	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0130426_27	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0130426_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0130426_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130426_29	UniRef90	UniRef90_A0A350VVC0	Single-stranded DNA-binding protein	NA
UHGV-0130426_29	eggNOG-mapper	679200.HMPREF9333_00481	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0130426_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0130426_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0130426_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0130426_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0130426_29	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0130426_31	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0130426_31	UniRef90	UniRef90_UPI00100A781C	transposase	NA
UHGV-0130426_31	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0130426_31	Structural annotation	PF07141	NA	NA
UHGV-0130426_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130426_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0130426_32	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-0130426_32	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0130426_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0130426_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0130426_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0130426_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0130426_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0130426_33	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0130426_33	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0130426_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0130426_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0130426_34	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0130426_34	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0130426_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0130426_34	COG	COG2369	NA	NA
UHGV-0130426_34	Structural annotation	PF06152	NA	NA
UHGV-0130426_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0130426_36	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0130426_36	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0130426_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0130426_36	Structural annotation	PF06810	NA	NA
UHGV-0130426_37	PHROG	phrog_212	major head protein	head and packaging
UHGV-0130426_37	UniRef90	UniRef90_A0A350VVC8	Phage capsid protein	NA
UHGV-0130426_37	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0130426_37	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0130426_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0130426_39	PHROG	phrog_3366	NA	unknown function
UHGV-0130426_39	Pfam	PF20536	NA	DUF6751
UHGV-0130426_39	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0130426_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0130426_40	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-0130426_40	eggNOG-mapper	1235790.C805_00048	NA	NA
UHGV-0130426_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0130426_40	Structural annotation	PF11114	NA	NA
UHGV-0130426_41	PHROG	phrog_3266	tail completion	connector
UHGV-0130426_41	UniRef90	UniRef90_A0A416DT59	Chloramphenicol resistance protein	NA
UHGV-0130426_41	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-0130426_41	Structural annotation	PF12691	NA	NA
UHGV-0130426_42	PHROG	phrog_3099	NA	unknown function
UHGV-0130426_42	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0130426_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0130426_43	PHROG	phrog_11299	NA	unknown function
UHGV-0130426_43	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0130426_43	Structural annotation	PF10666	NA	NA
UHGV-0130426_44	PHROG	phrog_706	NA	unknown function
UHGV-0130426_44	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-0130426_44	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0130426_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0130426_44	Structural annotation	PF06854	NA	NA
UHGV-0130426_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0130426_45	eggNOG-mapper	33035.JPJF01000043_gene1003	phage tail tape measure protein	NA
UHGV-0130426_45	COG	COG1511	NA	NA
UHGV-0130426_46	PHROG	phrog_1194	NA	unknown function
UHGV-0130426_46	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0130426_46	Pfam	PF20458	NA	DUF6711
UHGV-0130426_46	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0130426_47	PHROG	phrog_18190	NA	unknown function
UHGV-0130426_47	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0130426_47	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0130426_50	PHROG	phrog_9428	NA	unknown function
UHGV-0130426_50	UniRef90	UniRef90_A0A3A6GVM2	Serine/threonine protein kinase	NA
UHGV-0130426_50	eggNOG-mapper	411470.RUMGNA_00253	NA	NA
UHGV-0130426_51	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0130426_52	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0130426_52	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0130426_52	UniRef90	UniRef90_A0A350RPP3	SPOR domain-containing protein	NA
UHGV-0130426_52	eggNOG-mapper	511680.BUTYVIB_00396	peptidase	NA
UHGV-0130426_52	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0130426_52	Pfam	PF05036	SPOR domain	SPOR
UHGV-0130426_52	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0130426_52	Structural annotation	PF01551, PF05036, MF_02022, NF040883, NF008641, COG0739	NA	NA