UHGV-0130641

Genome information

Genome length 34,289 bps

CDS count 50

Completeness 94.36% (high-quality)

geNomad score 0.9528

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130641
vOTU ID	vOTU-064963
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_333092
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9528
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.39
Jumbo phage	No

Genome content
Genome length	34,289 bps
GC content	41.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.86%
Average CDS length	640.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130641_1	eggNOG-mapper	688270.Celal_3320	NA	NA
UHGV-0130641_2	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0130641_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0130641_3	UniRef90	UniRef90_UPI00189B6B46	helix-turn-helix domain-containing protein	NA
UHGV-0130641_3	eggNOG-mapper	742766.HMPREF9455_02990	Transcriptional regulator	NA
UHGV-0130641_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0130641_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0130641_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0130641_3	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0130641_8	KOfam	K20918	vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation	NA
UHGV-0130641_8	UniRef90	UniRef90_A0A413IG35	LuxR family transcriptional regulator	NA
UHGV-0130641_8	eggNOG-mapper	869213.JCM21142_528	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	NA
UHGV-0130641_8	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0130641_8	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0130641_8	Structural annotation	PF00196, COG2771	NA	NA
UHGV-0130641_9	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0130641_9	UniRef90	UniRef90_UPI001897F32D	NA	NA
UHGV-0130641_9	eggNOG-mapper	1280706.AUJE01000003_gene2278	NA	NA
UHGV-0130641_9	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0130641_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0130641_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0130641_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0130641_10	UniRef90	UniRef90_A0A413IG75	Replicative DNA helicase	NA
UHGV-0130641_10	eggNOG-mapper	411476.BACOVA_04243	Participates in initiation and elongation during chromosome replication	NA
UHGV-0130641_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0130641_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0130641_10	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0130641_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0130641_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0130641_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0130641_12	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0130641_12	UniRef90	UniRef90_A0A6I0JET0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0130641_12	eggNOG-mapper	679935.Alfi_1857	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0130641_12	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0130641_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0130641_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0130641_12	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0130641_16	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130641_16	UniRef90	UniRef90_A0A413IGE7	HNH endonuclease	NA
UHGV-0130641_16	eggNOG-mapper	1121324.CLIT_8c00820	HNH endonuclease	NA
UHGV-0130641_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0130641_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0130641_17	Structural annotation	PF04703, MF_01819	NA	NA
UHGV-0130641_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0130641_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0130641_18	UniRef90	UniRef90_UPI000D0AF22A	tyrosine-type recombinase/integrase	NA
UHGV-0130641_18	eggNOG-mapper	926692.AZYG01000026_gene1759	Belongs to the 'phage' integrase family	NA
UHGV-0130641_18	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0130641_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130641_18	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0130641_18	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0130641_19	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0130641_19	UniRef90	UniRef90_A0A413IG44	Phage terminase small subunit P27 family	NA
UHGV-0130641_19	eggNOG-mapper	1417296.U879_13600	Phage terminase, small subunit	NA
UHGV-0130641_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0130641_19	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0130641_19	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0130641_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0130641_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0130641_20	UniRef90	UniRef90_A0A413IG86	Terminase large subunit	NA
UHGV-0130641_20	eggNOG-mapper	2754.EH55_13175	Terminase	NA
UHGV-0130641_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0130641_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0130641_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0130641_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0130641_22	Structural annotation	PF14282	NA	NA
UHGV-0130641_23	UniRef90	UniRef90_UPI0007FB56D6	NA	NA
UHGV-0130641_23	eggNOG-mapper	411476.BACOVA_03957	NA	NA
UHGV-0130641_23	Pfam	PF16476	NA	DUF5053
UHGV-0130641_23	Structural annotation	PF16476	NA	NA
UHGV-0130641_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0130641_24	UniRef90	UniRef90_A0A413IG58	Phage portal protein	NA
UHGV-0130641_24	eggNOG-mapper	398512.JQKC01000005_gene5448	Phage portal protein, HK97 family	NA
UHGV-0130641_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0130641_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0130641_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0130641_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0130641_25	KOfam	K06904	NA	NA
UHGV-0130641_25	PHROG	phrog_617	major head protein	head and packaging
UHGV-0130641_25	UniRef90	UniRef90_A0A849XMW7	HK97 family phage prohead protease	NA
UHGV-0130641_25	eggNOG-mapper	553175.POREN0001_0011	Phage prohead protease, HK97 family	NA
UHGV-0130641_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0130641_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0130641_26	PHROG	phrog_617	major head protein	head and packaging
UHGV-0130641_26	UniRef90	UniRef90_A0A413IG54	Phage major capsid protein	NA
UHGV-0130641_26	eggNOG-mapper	1125863.JAFN01000001_gene3549	Phage capsid family	NA
UHGV-0130641_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0130641_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0130641_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0130641_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0130641_27	UniRef90	UniRef90_A0A413IG96	Helix-hairpin-helix domain-containing protein	NA
UHGV-0130641_27	Structural annotation	PF01281, PF14520	NA	NA
UHGV-0130641_28	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0130641_28	UniRef90	UniRef90_A0A413IG51	Phage gp6-like head-tail connector protein	NA
UHGV-0130641_28	eggNOG-mapper	411684.HPDFL43_04895	Phage gp6-like head-tail connector protein	NA
UHGV-0130641_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0130641_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0130641_28	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0130641_29	UniRef90	UniRef90_A0A849XL54	Head-tail adaptor protein	NA
UHGV-0130641_29	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0130641_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0130641_32	PHROG	phrog_1407	major tail protein	tail
UHGV-0130641_32	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0130641_33	Structural annotation	PF19591	NA	NA
UHGV-0130641_35	PHROG	phrog_27166	tail length tape measure protein	tail
UHGV-0130641_35	UniRef90	UniRef90_A0A413IG66	Phage tail length tape measure family protein	NA
UHGV-0130641_35	eggNOG-mapper	1125863.JAFN01000001_gene3558	Prophage tail length tape measure protein	NA
UHGV-0130641_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0130641_36	PHROG	phrog_8215	baseplate wedge initiator	tail
UHGV-0130641_36	eggNOG-mapper	1123008.KB905697_gene3236	Chaperone of endosialidase	NA
UHGV-0130641_36	Pfam	PF04917	Bacterial shufflon protein, N-terminal constant region	Shufflon_N
UHGV-0130641_36	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0130641_36	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0130641_40	PHROG	phrog_20732	NA	unknown function
UHGV-0130641_40	UniRef90	UniRef90_A0A495VV42	Holin family protein	NA
UHGV-0130641_40	eggNOG-mapper	1349822.NSB1T_07985	NA	NA
UHGV-0130641_40	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0130641_41	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0130641_41	PHROG	phrog_894	endolysin	lysis
UHGV-0130641_41	UniRef90	UniRef90_UPI0013D82C28	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0130641_41	eggNOG-mapper	272559.BF9343_2351	Peptidase M15	NA
UHGV-0130641_41	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0130641_41	COG	COG3108	NA	NA
UHGV-0130641_41	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0130641_45	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0130641_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0130641_45	UniRef90	UniRef90_UPI0018847F59	tyrosine-type recombinase/integrase	NA
UHGV-0130641_45	eggNOG-mapper	457424.BFAG_01465	Phage integrase family	NA
UHGV-0130641_45	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0130641_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130641_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0130641_45	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0130641_48	eggNOG-mapper	1121129.KB903368_gene798	NA	NA
UHGV-0130641_50	KOfam	K20974	K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]	NA
UHGV-0130641_50	PHROG	phrog_20458	NA	unknown function
UHGV-0130641_50	UniRef90	UniRef90_UPI001F1D7D57	ATP-binding protein	NA
UHGV-0130641_50	eggNOG-mapper	742817.HMPREF9449_00883	Histidine kinase-like ATPases	NA
UHGV-0130641_50	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0130641_50	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0130641_50	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0130641_50	COG	COG0642	Signal transduction histidine kinase	NA