UHGV-0130650

Genome information

Genome length 32,988 bps

CDS count 46

Completeness 100.00% (complete)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130650
vOTU ID	vOTU-007253
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_317025
BioSample	SAMN00691414
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.5
Jumbo phage	No

Genome content
Genome length	32,988 bps
GC content	50.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.33%
Average CDS length	673.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130650_1	PHROG	phrog_533	portal protein	head and packaging
UHGV-0130650_1	UniRef90	UniRef90_A0A328UBS0	Portal protein	NA
UHGV-0130650_1	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0130650_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0130650_1	Structural annotation	PF05133, MF_04135, TIGR01542, COG5511	NA	NA
UHGV-0130650_3	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0130650_3	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-0130650_3	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0130650_3	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0130650_3	COG	COG2369	NA	NA
UHGV-0130650_3	Structural annotation	PF06152	NA	NA
UHGV-0130650_4	eggNOG-mapper	1064535.MELS_1696	NA	NA
UHGV-0130650_6	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0130650_8	PHROG	phrog_422	major head protein	head and packaging
UHGV-0130650_8	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0130650_8	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0130650_8	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0130650_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0130650_9	UniRef90	UniRef90_F5L4I5	Protein gp8	NA
UHGV-0130650_9	eggNOG-mapper	986075.CathTA2_0698	NA	NA
UHGV-0130650_10	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-0130650_10	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0130650_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0130650_11	UniRef90	UniRef90_UPI000C857E2C	minor capsid protein	NA
UHGV-0130650_11	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-0130650_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0130650_11	Structural annotation	PF11114	NA	NA
UHGV-0130650_12	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0130650_12	Structural annotation	PF12691	NA	NA
UHGV-0130650_13	PHROG	phrog_820	major tail protein	tail
UHGV-0130650_13	UniRef90	UniRef90_UPI001C237F9F	capsid protein	NA
UHGV-0130650_13	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0130650_13	COG	COG5492	NA	NA
UHGV-0130650_14	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-0130650_14	Structural annotation	PF10666	NA	NA
UHGV-0130650_15	PHROG	phrog_706	NA	unknown function
UHGV-0130650_15	UniRef90	UniRef90_UPI000C819E80	Gp15 family bacteriophage protein	NA
UHGV-0130650_15	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-0130650_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0130650_15	Structural annotation	PF06854	NA	NA
UHGV-0130650_16	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0130650_16	UniRef90	UniRef90_A7VNP8	Phage tail tape measure protein, TP901 family	NA
UHGV-0130650_16	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0130650_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0130650_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0130650_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0130650_17	eggNOG-mapper	428125.CLOLEP_00173	NA	NA
UHGV-0130650_17	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0130650_19	eggNOG-mapper	1321814.HMPREF9089_00943	NA	NA
UHGV-0130650_20	PHROG	phrog_33625	holin	lysis
UHGV-0130650_20	UniRef90	UniRef90_UPI0019574318	phage holin	NA
UHGV-0130650_20	eggNOG-mapper	445972.ANACOL_01874	COG COG5546 Small integral membrane protein	NA
UHGV-0130650_20	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0130650_20	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0130650_20	COG	COG5546	NA	NA
UHGV-0130650_20	Structural annotation	COG5546	NA	NA
UHGV-0130650_21	KOfam	K07273	acm; lysozyme	NA
UHGV-0130650_21	PHROG	phrog_291	endolysin	lysis
UHGV-0130650_21	UniRef90	UniRef90_UPI00195CDDFF	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0130650_21	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-0130650_21	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0130650_21	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0130650_21	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0130650_22	KOfam	K14059	int; integrase	NA
UHGV-0130650_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0130650_22	UniRef90	UniRef90_A0A110A705	Tyrosine recombinase XerC	NA
UHGV-0130650_22	eggNOG-mapper	428125.CLOLEP_01837	Belongs to the 'phage' integrase family	NA
UHGV-0130650_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130650_22	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0130650_22	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0130650_23	PHROG	phrog_38135	NA	unknown function
UHGV-0130650_23	eggNOG-mapper	1347369.CCAD010000035_gene1055	NA	NA
UHGV-0130650_23	Pfam	PF14020	NA	DUF4236
UHGV-0130650_23	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0130650_23	Structural annotation	PF14020	NA	NA
UHGV-0130650_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0130650_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0130650_25	UniRef90	UniRef90_UPI00156FD326	helix-turn-helix domain-containing protein	NA
UHGV-0130650_25	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0130650_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130650_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0130650_25	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0130650_28	eggNOG-mapper	1232443.BAIA02000066_gene981	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0130650_28	Pfam	PF14608	RNA-binding, Nab2-type zinc finger	zf-CCCH_2
UHGV-0130650_28	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0130650_29	UniRef90	UniRef90_UPI00041F5558	helix-turn-helix domain-containing protein	NA
UHGV-0130650_29	eggNOG-mapper	1125701.HMPREF1221_00005	DNA-binding protein PTS system, IIA component	NA
UHGV-0130650_29	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0130650_29	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0130650_29	COG	COG1762	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	NA
UHGV-0130650_29	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0130650_32	PHROG	phrog_22695	NA	unknown function
UHGV-0130650_32	eggNOG-mapper	693746.OBV_01880	NA	NA
UHGV-0130650_33	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0130650_33	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130650_33	UniRef90	UniRef90_UPI001956E7CF	NA	NA
UHGV-0130650_33	eggNOG-mapper	1232443.BAIA02000078_gene46	NA	NA
UHGV-0130650_33	Pfam	PF10926	NA	DUF2800
UHGV-0130650_33	COG	COG2887	RecB family exonuclease	NA
UHGV-0130650_33	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0130650_34	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0130650_34	UniRef90	UniRef90_UPI0019568837	NA	NA
UHGV-0130650_34	eggNOG-mapper	1232443.BAIA02000078_gene45	NA	NA
UHGV-0130650_34	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0130650_34	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0130650_35	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0130650_35	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0130650_35	UniRef90	UniRef90_G9YWD0	DNA-directed DNA polymerase	NA
UHGV-0130650_35	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-0130650_35	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0130650_35	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0130650_35	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0130650_37	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0130650_37	UniRef90	UniRef90_G9YWD3	Virulence-associated protein E	NA
UHGV-0130650_37	eggNOG-mapper	1117108.PAALTS15_09960	virulence-associated E family protein	NA
UHGV-0130650_37	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0130650_37	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0130650_37	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0130650_38	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130650_38	UniRef90	UniRef90_A0A173YJM2	VRR-NUC domain	NA
UHGV-0130650_38	eggNOG-mapper	879308.HMPREF9130_1219	VRR_NUC	NA
UHGV-0130650_38	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0130650_38	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0130650_39	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0130650_39	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0130650_39	UniRef90	UniRef90_UPI00195B0350	DEAD/DEAH box helicase	NA
UHGV-0130650_39	eggNOG-mapper	1232443.BAIA02000078_gene39	snf2 family	NA
UHGV-0130650_39	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0130650_39	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0130650_39	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0130650_39	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0130650_40	eggNOG-mapper	657322.FPR_23450	NA	NA
UHGV-0130650_41	UniRef90	UniRef90_A0A8J6LYN8	Lar family restriction alleviation protein	NA
UHGV-0130650_41	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0130650_41	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0130650_42	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0130650_42	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0130650_42	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0130650_44	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0130650_44	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0130650_44	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0130650_44	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0130650_44	Structural annotation	PF16677	NA	NA
UHGV-0130650_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130650_45	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0130650_45	UniRef90	UniRef90_A0A3A6EPV3	PBSX family phage terminase large subunit	NA
UHGV-0130650_45	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0130650_45	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0130650_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0130650_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0130650_45	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0130650_46	PHROG	phrog_533	portal protein	head and packaging
UHGV-0130650_46	UniRef90	UniRef90_UPI001E450877	phage portal protein	NA
UHGV-0130650_46	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0130650_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6