UHGV-0130661

Genome information

Genome length 34,879 bps

CDS count 54

Completeness 95.60% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130661
vOTU ID	vOTU-075835
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_321758
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.60% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.5
Jumbo phage	No

Genome content
Genome length	34,879 bps
GC content	39.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.69%
Average CDS length	601.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130661_1	KOfam	K14059	int; integrase	NA
UHGV-0130661_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0130661_1	UniRef90	UniRef90_A0A844DXY4	Tyrosine-type recombinase/integrase	NA
UHGV-0130661_1	eggNOG-mapper	1256908.HMPREF0373_01612	Phage integrase family	NA
UHGV-0130661_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130661_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0130661_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0130661_3	PHROG	phrog_7115	NA	unknown function
UHGV-0130661_3	UniRef90	UniRef90_UPI0018982FC5	PH domain-containing protein	NA
UHGV-0130661_3	eggNOG-mapper	536233.CLO_1726	Bacterial PH domain	NA
UHGV-0130661_3	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0130661_3	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0130661_4	PHROG	phrog_87	metallo-protease	other
UHGV-0130661_4	UniRef90	UniRef90_UPI0015EBCD4F	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0130661_4	eggNOG-mapper	1235798.C817_04756	IrrE N-terminal-like domain	NA
UHGV-0130661_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0130661_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0130661_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0130661_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0130661_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0130661_5	UniRef90	UniRef90_UPI001C3B6466	Helix-turn-helix domain-containing protein	NA
UHGV-0130661_5	eggNOG-mapper	1163671.JAGI01000002_gene3058	Helix-turn-helix domain protein	NA
UHGV-0130661_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130661_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0130661_5	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0130661_6	UniRef90	UniRef90_UPI001D081DBD	XRE family transcriptional regulator	NA
UHGV-0130661_6	eggNOG-mapper	768486.EHR_02785	NA	NA
UHGV-0130661_6	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0130661_9	UniRef90	UniRef90_A0A4R2LFA5	HTH cro/C1-type domain-containing protein	NA
UHGV-0130661_9	eggNOG-mapper	500632.CLONEX_03572	NA	NA
UHGV-0130661_9	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-0130661_10	PHROG	phrog_14088	NA	unknown function
UHGV-0130661_11	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130661_11	UniRef90	UniRef90_UPI00156EDECA	NA	NA
UHGV-0130661_11	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0130661_11	Structural annotation	COG2250	NA	NA
UHGV-0130661_13	PHROG	phrog_6058	NA	unknown function
UHGV-0130661_13	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0130661_13	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0130661_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0130661_14	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0130661_14	eggNOG-mapper	742741.HMPREF9475_00404	NA	NA
UHGV-0130661_14	Structural annotation	PF21578	NA	NA
UHGV-0130661_15	PHROG	phrog_824	NA	unknown function
UHGV-0130661_15	UniRef90	UniRef90_A0A412Q219	VRR-NUC domain-containing protein	NA
UHGV-0130661_15	eggNOG-mapper	411468.CLOSCI_01472	VRR_NUC	NA
UHGV-0130661_15	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0130661_15	Structural annotation	PF08774	NA	NA
UHGV-0130661_16	PHROG	phrog_20014	NA	unknown function
UHGV-0130661_16	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-0130661_17	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0130661_17	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0130661_17	UniRef90	UniRef90_A0A412T732	ParA family protein	NA
UHGV-0130661_17	eggNOG-mapper	411468.CLOSCI_01475	Cellulose biosynthesis protein BcsQ	NA
UHGV-0130661_17	Pfam	PF13614	AAA domain	AAA_31
UHGV-0130661_17	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0130661_17	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0130661_18	PHROG	phrog_37044	NA	unknown function
UHGV-0130661_18	eggNOG-mapper	411468.CLOSCI_01479	NA	NA
UHGV-0130661_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0130661_19	PHROG	phrog_15982	NA	unknown function
UHGV-0130661_19	UniRef90	UniRef90_A0A7X3SK65	NA	NA
UHGV-0130661_19	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0130661_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0130661_19	Pfam	PF12961	NA	DUF3850
UHGV-0130661_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0130661_19	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0130661_21	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0130661_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0130661_21	UniRef90	UniRef90_UPI001D060E45	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0130661_21	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0130661_21	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0130661_21	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0130661_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0130661_21	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0130661_23	PHROG	phrog_11237	NA	unknown function
UHGV-0130661_23	eggNOG-mapper	1235798.C817_04578	NA	NA
UHGV-0130661_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130661_24	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0130661_24	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0130661_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0130661_25	PHROG	phrog_1066	NA	unknown function
UHGV-0130661_25	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-0130661_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0130661_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0130661_26	UniRef90	UniRef90_A0A4V2F7T1	Phage terminase large subunit-like protein	NA
UHGV-0130661_26	eggNOG-mapper	318464.IO99_13765	Terminase	NA
UHGV-0130661_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0130661_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0130661_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0130661_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0130661_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0130661_27	UniRef90	UniRef90_UPI001EE04D35	phage portal protein	NA
UHGV-0130661_27	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0130661_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0130661_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0130661_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0130661_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0130661_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0130661_28	UniRef90	UniRef90_UPI001D061BF6	Clp protease ClpP	NA
UHGV-0130661_28	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0130661_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0130661_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0130661_28	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0130661_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0130661_29	UniRef90	UniRef90_A0A417QHY0	Phage major capsid protein	NA
UHGV-0130661_29	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-0130661_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0130661_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0130661_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0130661_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0130661_30	eggNOG-mapper	476272.RUMHYD_02855	NA	NA
UHGV-0130661_31	PHROG	phrog_5223	neck protein	connector
UHGV-0130661_31	UniRef90	UniRef90_A0A3D2X9T8	DNA-packaging protein	NA
UHGV-0130661_31	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0130661_32	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0130661_32	UniRef90	UniRef90_UPI0018ABC448	phage head closure protein	NA
UHGV-0130661_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0130661_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0130661_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0130661_33	UniRef90	UniRef90_UPI001D07550A	HK97 gp10 family phage protein	NA
UHGV-0130661_33	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0130661_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0130661_33	Structural annotation	TIGR01725	NA	NA
UHGV-0130661_34	PHROG	phrog_78	tail terminator	connector
UHGV-0130661_34	eggNOG-mapper	498761.HM1_2965	NA	NA
UHGV-0130661_34	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0130661_35	PHROG	phrog_88	major tail protein	tail
UHGV-0130661_35	UniRef90	UniRef90_A0A1C5SV91	Phage major tail protein, phi13 family	NA
UHGV-0130661_35	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0130661_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0130661_35	COG	COG5492	NA	NA
UHGV-0130661_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0130661_36	PHROG	phrog_88	major tail protein	tail
UHGV-0130661_36	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0130661_36	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0130661_36	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0130661_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0130661_36	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0130661_37	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-0130661_37	Structural annotation	PF11836	NA	NA
UHGV-0130661_38	eggNOG-mapper	411459.RUMOBE_00928	NA	NA
UHGV-0130661_40	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0130661_40	PHROG	phrog_5218	NA	unknown function
UHGV-0130661_40	UniRef90	UniRef90_A0A414U8D6	PhageMin_Tail domain-containing protein	NA
UHGV-0130661_40	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0130661_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0130661_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0130661_40	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0130661_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0130661_41	UniRef90	UniRef90_UPI001EDFA8F1	phage tail protein	NA
UHGV-0130661_41	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-0130661_41	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0130661_42	PHROG	phrog_538	minor tail protein	tail
UHGV-0130661_42	UniRef90	UniRef90_UPI001E30CCA1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0130661_42	eggNOG-mapper	411468.CLOSCI_00276	NA	NA
UHGV-0130661_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0130661_42	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0130661_43	PHROG	phrog_9994	NA	unknown function
UHGV-0130661_43	UniRef90	UniRef90_UPI000C76CD77	H-type lectin domain-containing protein	NA
UHGV-0130661_43	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0130661_43	Structural annotation	PF20747, PF16990	NA	NA
UHGV-0130661_44	PHROG	phrog_12931	NA	unknown function
UHGV-0130661_44	eggNOG-mapper	742723.HMPREF9477_00891	NA	NA
UHGV-0130661_44	Structural annotation	PF17642	NA	NA
UHGV-0130661_45	PHROG	phrog_1382	NA	unknown function
UHGV-0130661_45	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0130661_45	Structural annotation	NF040910	NA	NA
UHGV-0130661_46	PHROG	phrog_1382	NA	unknown function
UHGV-0130661_46	eggNOG-mapper	665950.HMPREF1025_01332	NA	NA
UHGV-0130661_46	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0130661_46	Structural annotation	NF040910	NA	NA
UHGV-0130661_47	PHROG	phrog_16164	NA	unknown function
UHGV-0130661_47	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0130661_47	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0130661_48	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0130661_48	Structural annotation	PF09136	NA	NA
UHGV-0130661_50	PHROG	phrog_38707	NA	unknown function
UHGV-0130661_50	eggNOG-mapper	478749.BRYFOR_07634	tail collar domain protein	NA
UHGV-0130661_50	COG	COG4675	Phage tail collar domain	NA
UHGV-0130661_52	PHROG	phrog_4105	NA	unknown function
UHGV-0130661_52	eggNOG-mapper	1435051.BMOU_0219	NA	NA
UHGV-0130661_53	PHROG	phrog_1129	holin	lysis
UHGV-0130661_53	UniRef90	UniRef90_UPI001BC82F37	phage holin family protein	NA
UHGV-0130661_53	eggNOG-mapper	742733.HMPREF9469_05010	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0130661_53	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0130661_53	Structural annotation	PF16079	NA	NA
UHGV-0130661_54	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0130661_54	PHROG	phrog_435	endolysin	lysis
UHGV-0130661_54	UniRef90	UniRef90_A0A358PLS7	MurNAc-LAA domain-containing protein	NA
UHGV-0130661_54	eggNOG-mapper	742723.HMPREF9477_00888	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0130661_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0130661_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0130661_54	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA