UHGV-0130756

Genome information

Genome length 60,115 bps

CDS count 94

Completeness 99.90% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130756
vOTU ID	vOTU-066084
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_387478
BioSample	SAMN04261157
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.85
Jumbo phage	No

Genome content
Genome length	60,115 bps
GC content	49.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	83.07%
Average CDS length	533.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130756_1	UniRef90	UniRef90_UPI0009300B98	CopG family transcriptional regulator	NA
UHGV-0130756_1	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-0130756_2	Structural annotation	PF07878	NA	NA
UHGV-0130756_3	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0130756_3	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0130756_3	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0130756_3	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0130756_3	Pfam	PF13614	AAA domain	AAA_31
UHGV-0130756_3	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0130756_3	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0130756_5	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0130756_5	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0130756_5	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0130756_5	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0130756_5	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0130756_5	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0130756_5	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0130756_6	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0130756_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130756_6	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0130756_9	Structural annotation	PF16311, NF038219	NA	NA
UHGV-0130756_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0130756_10	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0130756_10	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0130756_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0130756_10	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0130756_10	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0130756_11	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0130756_11	UniRef90	UniRef90_A0A8J6LUU7	XRE family transcriptional regulator	NA
UHGV-0130756_11	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0130756_11	Structural annotation	TIGR03070	NA	NA
UHGV-0130756_12	PHROG	phrog_4652	NA	unknown function
UHGV-0130756_12	UniRef90	UniRef90_A0A0P0DZ87	Cubilin	NA
UHGV-0130756_12	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0130756_12	Structural annotation	TIGR02582, COG1604	NA	NA
UHGV-0130756_13	PHROG	phrog_15946	NA	unknown function
UHGV-0130756_13	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0130756_14	Structural annotation	PF10922	NA	NA
UHGV-0130756_16	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0130756_16	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0130756_18	Structural annotation	PF14143	NA	NA
UHGV-0130756_19	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0130756_19	UniRef90	UniRef90_A0A7Y4S123	Transcriptional repressor NrdR (Fragment)	NA
UHGV-0130756_19	eggNOG-mapper	1132855.KB913035_gene1070	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0130756_19	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0130756_19	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0130756_19	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0130756_21	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0130756_21	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0130756_21	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0130756_21	Pfam	PF13479	AAA domain	AAA_24
UHGV-0130756_21	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0130756_22	PHROG	phrog_18107	NA	unknown function
UHGV-0130756_22	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0130756_22	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0130756_22	Structural annotation	PF05037	NA	NA
UHGV-0130756_23	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130756_23	UniRef90	UniRef90_A0A8D4LFG4	HNH endonuclease	NA
UHGV-0130756_23	eggNOG-mapper	945021.TEH_18310	NUMOD4 motif	NA
UHGV-0130756_23	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0130756_23	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0130756_23	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0130756_23	Structural annotation	PF13392, PF20987	NA	NA
UHGV-0130756_24	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0130756_24	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0130756_24	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0130756_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0130756_24	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0130756_25	PHROG	phrog_924	NA	unknown function
UHGV-0130756_25	Pfam	PF04448	NA	DUF551
UHGV-0130756_25	Structural annotation	PF04448	NA	NA
UHGV-0130756_26	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0130756_26	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0130756_26	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0130756_26	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0130756_32	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0130756_34	PHROG	phrog_7704	NA	unknown function
UHGV-0130756_34	UniRef90	UniRef90_UPI001495255A	NA	NA
UHGV-0130756_34	Pfam	PF04448	NA	DUF551
UHGV-0130756_35	Structural annotation	PF16677	NA	NA
UHGV-0130756_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0130756_39	PHROG	phrog_11947	NA	unknown function
UHGV-0130756_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130756_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0130756_39	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0130756_41	Structural annotation	NF041588	NA	NA
UHGV-0130756_44	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0130756_44	Structural annotation	PF14354, TIGR03655, COG3478	NA	NA
UHGV-0130756_45	PHROG	phrog_15768	NA	unknown function
UHGV-0130756_45	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-0130756_45	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0130756_45	Pfam	PF19808	NA	DUF6291
UHGV-0130756_45	Structural annotation	PF19808	NA	NA
UHGV-0130756_46	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0130756_46	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0130756_46	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0130756_46	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0130756_46	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0130756_46	COG	COG0305	Replicative DNA helicase	NA
UHGV-0130756_46	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0130756_47	PHROG	phrog_419	NA	unknown function
UHGV-0130756_47	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-0130756_47	eggNOG-mapper	768486.EHR_02665	NA	NA
UHGV-0130756_47	Structural annotation	PF14083	NA	NA
UHGV-0130756_51	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130756_54	eggNOG-mapper	706433.HMPREF9430_00388	NA	NA
UHGV-0130756_54	Structural annotation	PF11906, PF09624, MF_00791, NF038353, NF033903, COG5633	NA	NA
UHGV-0130756_55	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0130756_55	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0130756_55	UniRef90	UniRef90_A0A8D4D1X2	Bro-N domain-containing protein	NA
UHGV-0130756_55	eggNOG-mapper	552398.HMPREF0866_02978	BRO family, N-terminal domain	NA
UHGV-0130756_55	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0130756_55	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0130756_55	COG	COG3617	Prophage antirepressor	NA
UHGV-0130756_55	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0130756_56	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0130756_59	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0130756_59	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0130756_59	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0130756_59	eggNOG-mapper	1410633.JHWR01000012_gene95	Resolvase, N terminal domain	NA
UHGV-0130756_59	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0130756_59	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0130756_59	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0130756_60	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0130756_60	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0130756_60	UniRef90	UniRef90_UPI00067F3ABF	RNA-splicing ligase RtcB	NA
UHGV-0130756_60	eggNOG-mapper	1211844.CBLM010000044_gene358	tRNA-splicing ligase RtcB	NA
UHGV-0130756_60	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0130756_60	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0130756_60	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0130756_61	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0130756_61	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0130756_61	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0130756_61	COG	COG5410	NA	NA
UHGV-0130756_61	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0130756_63	PHROG	phrog_64	portal protein	head and packaging
UHGV-0130756_63	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0130756_63	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0130756_63	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0130756_63	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0130756_64	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0130756_64	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0130756_64	Structural annotation	PF14359, NF040588, COG3613	NA	NA
UHGV-0130756_67	PHROG	phrog_29	major head protein	head and packaging
UHGV-0130756_67	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0130756_67	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0130756_67	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0130756_67	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0130756_68	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0130756_68	Structural annotation	TIGR01560	NA	NA
UHGV-0130756_69	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0130756_71	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0130756_72	PHROG	phrog_158	major tail protein	tail
UHGV-0130756_72	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0130756_72	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0130756_72	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0130756_73	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0130756_73	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0130756_73	Pfam	PF16478	NA	DUF5055
UHGV-0130756_73	Structural annotation	PF16478	NA	NA
UHGV-0130756_74	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0130756_75	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0130756_75	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0130756_75	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0130756_76	PHROG	phrog_1194	NA	unknown function
UHGV-0130756_76	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0130756_76	Pfam	PF20458	NA	DUF6711
UHGV-0130756_76	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0130756_77	PHROG	phrog_13879	NA	unknown function
UHGV-0130756_77	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0130756_77	Pfam	PF19789	NA	DUF6273
UHGV-0130756_77	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0130756_78	PHROG	phrog_18725	NA	unknown function
UHGV-0130756_78	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0130756_80	PHROG	phrog_2310	NA	unknown function
UHGV-0130756_81	KOfam	K07273	acm; lysozyme	NA
UHGV-0130756_81	PHROG	phrog_291	endolysin	lysis
UHGV-0130756_81	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0130756_81	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0130756_81	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0130756_81	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0130756_81	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0130756_83	PHROG	phrog_15303	NA	unknown function
UHGV-0130756_84	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0130756_84	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0130756_84	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0130756_84	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0130756_90	PHROG	phrog_16490	NA	unknown function
UHGV-0130756_90	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0130756_91	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0130756_92	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0130756_93	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0130756_93	UniRef90	UniRef90_UPI001D11EAA8	toxin Bro	NA
UHGV-0130756_93	eggNOG-mapper	556261.HMPREF0240_03657	Phage antirepressor protein	NA
UHGV-0130756_93	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0130756_93	COG	COG3617	Prophage antirepressor	NA
UHGV-0130756_93	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0130756_94	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1