UHGV-0130761

Genome information

Genome length 48,017 bps

CDS count 60

Completeness 82.30% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130761
vOTU ID	vOTU-017050
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_387510
BioSample	NA
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.55
Jumbo phage	No

Genome content
Genome length	48,017 bps
GC content	46.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	95.56%
Average CDS length	767.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130761_1	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0130761_1	eggNOG-mapper	945021.TEH_18370	Helix-turn-helix domain	NA
UHGV-0130761_1	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0130761_2	PHROG	phrog_9804	NA	unknown function
UHGV-0130761_2	UniRef90	UniRef90_R6LQQ5	Inhibitor_G39P domain-containing protein	NA
UHGV-0130761_2	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0130761_2	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0130761_2	Structural annotation	PF11417	NA	NA
UHGV-0130761_8	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0130761_8	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0130761_8	UniRef90	UniRef90_R6ILQ3	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0130761_8	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0130761_8	Pfam	PF00692	dUTPase	dUTPase
UHGV-0130761_8	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0130761_8	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0130761_8	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0130761_9	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0130761_9	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0130761_11	Structural annotation	PF13969	NA	NA
UHGV-0130761_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0130761_12	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0130761_12	UniRef90	UniRef90_A0A410PTN3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0130761_12	eggNOG-mapper	693746.OBV_41630	C-5 cytosine-specific DNA methylase	NA
UHGV-0130761_12	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0130761_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0130761_12	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0130761_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0130761_12	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0130761_14	Structural annotation	PF06289, COG1582	NA	NA
UHGV-0130761_15	PHROG	phrog_7314	NA	unknown function
UHGV-0130761_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0130761_16	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130761_16	UniRef90	UniRef90_U4R634	HNH domain-containing protein	NA
UHGV-0130761_16	eggNOG-mapper	394503.Ccel_3167	NA	NA
UHGV-0130761_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0130761_16	Structural annotation	PF01844, NF008448, COG1403	NA	NA
UHGV-0130761_18	PHROG	phrog_22543	NA	unknown function
UHGV-0130761_18	Pfam	PF09297	NADH pyrophosphatase zinc ribbon domain	zf-NADH-PPase
UHGV-0130761_21	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0130761_21	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0130761_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0130761_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130761_23	UniRef90	UniRef90_R6TSJ9	Single-stranded DNA-binding protein	NA
UHGV-0130761_23	eggNOG-mapper	445972.ANACOL_04434	Single-stranded DNA-binding protein	NA
UHGV-0130761_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0130761_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0130761_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0130761_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0130761_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0130761_24	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0130761_24	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0130761_24	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0130761_24	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0130761_25	PHROG	phrog_474	phosphofructokinase	other
UHGV-0130761_25	UniRef90	UniRef90_UPI00195F5FF7	NA	NA
UHGV-0130761_25	eggNOG-mapper	1095750.HMPREF9970_1026	NA	NA
UHGV-0130761_25	Pfam	PF19905	NA	DUF6378
UHGV-0130761_25	Structural annotation	PF19905	NA	NA
UHGV-0130761_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0130761_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130761_27	UniRef90	UniRef90_A0A7C6GL00	Single-stranded DNA-binding protein	NA
UHGV-0130761_27	eggNOG-mapper	1232443.BAIA02000073_gene513	Single-strand binding protein family	NA
UHGV-0130761_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0130761_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0130761_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0130761_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0130761_27	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0130761_30	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-0130761_30	UniRef90	UniRef90_A0A3D0X8D0	Helicase ATP-binding domain-containing protein (Fragment)	NA
UHGV-0130761_30	eggNOG-mapper	397288.C806_03713	helicase C-terminal domain protein	NA
UHGV-0130761_30	PADLOC	DrmD_00004	DrmD	DISARM
UHGV-0130761_30	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0130761_30	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0130761_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0130761_30	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0130761_30	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0130761_31	KOfam	K14059	int; integrase	NA
UHGV-0130761_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0130761_31	UniRef90	UniRef90_A0A6N7W462	Site-specific integrase	NA
UHGV-0130761_31	eggNOG-mapper	887325.HMPREF0381_0346	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0130761_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130761_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0130761_31	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0130761_32	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0130761_34	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0130761_37	eggNOG-mapper	1121334.KB911071_gene1966	NA	NA
UHGV-0130761_39	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0130761_39	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0130761_39	UniRef90	UniRef90_A0A1E1VI95	Muramidase	NA
UHGV-0130761_39	eggNOG-mapper	1158601.I585_02846	Peptidase family M23	NA
UHGV-0130761_39	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0130761_39	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0130761_39	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0130761_39	Structural annotation	PF01551, PF09992, NF040883, COG0739, COG3698	NA	NA
UHGV-0130761_40	PHROG	phrog_4105	NA	unknown function
UHGV-0130761_40	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0130761_42	PHROG	phrog_13589	NA	unknown function
UHGV-0130761_42	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0130761_42	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0130761_44	PHROG	phrog_19111	NA	unknown function
UHGV-0130761_45	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0130761_45	Structural annotation	PF10651	NA	NA
UHGV-0130761_48	eggNOG-mapper	1449126.JQKL01000002_gene1688	NA	NA
UHGV-0130761_48	Structural annotation	PF11134, MF_00923, NF010237, NF038128, COG5276	NA	NA
UHGV-0130761_49	Structural annotation	PF20387	NA	NA
UHGV-0130761_51	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0130761_51	UniRef90	UniRef90_A0A355JD53	Phage major capsid protein	NA
UHGV-0130761_51	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-0130761_51	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0130761_51	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0130761_53	PHROG	phrog_156	portal protein	head and packaging
UHGV-0130761_53	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-0130761_53	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0130761_56	PHROG	phrog_28563	NA	unknown function
UHGV-0130761_56	UniRef90	UniRef90_A0A0M9D4G0	INTEIN_C_TER domain-containing protein	NA
UHGV-0130761_56	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0130761_57	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130761_57	UniRef90	UniRef90_A0A3F2ZSG9	HNH endonuclease domain protein	NA
UHGV-0130761_57	eggNOG-mapper	1235800.C819_00490	HNH endonuclease	NA
UHGV-0130761_57	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0130761_57	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0130761_58	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130761_58	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0130761_58	UniRef90	UniRef90_A0A3S1ABC6	PBSX family phage terminase large subunit	NA
UHGV-0130761_58	eggNOG-mapper	696281.Desru_1088	Phage terminase large subunit	NA
UHGV-0130761_58	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0130761_58	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0130761_58	COG	COG1783	Phage terminase large subunit	NA
UHGV-0130761_58	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0130761_59	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0130761_59	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0130761_59	Structural annotation	PF16677	NA	NA