UHGV-0130778

Genome information

Genome length 39,735 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9699

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130778
vOTU ID	vOTU-008397
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_356519
BioSample	SAMN02675497
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9699
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.2
Jumbo phage	No

Genome content
Genome length	39,735 bps
GC content	34.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.85%
Average CDS length	631.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130778_2	KOfam	K14059	int; integrase	NA
UHGV-0130778_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0130778_2	UniRef90	UniRef90_G9QX55	Tyr recombinase domain-containing protein	NA
UHGV-0130778_2	eggNOG-mapper	445974.CLORAM_02973	Belongs to the 'phage' integrase family	NA
UHGV-0130778_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0130778_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0130778_2	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0130778_3	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0130778_3	UniRef90	UniRef90_A0A890GZR9	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0130778_3	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0130778_4	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0130778_4	UniRef90	UniRef90_UPI000E42750D	Abi family protein	NA
UHGV-0130778_4	eggNOG-mapper	1235792.C808_03102	Abi-like protein	NA
UHGV-0130778_4	PADLOC	AbiD	AbiD	Abi
UHGV-0130778_4	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0130778_4	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0130778_4	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0130778_5	PHROG	phrog_27728	NA	unknown function
UHGV-0130778_5	eggNOG-mapper	679192.HMPREF9013_1326	NA	NA
UHGV-0130778_5	Structural annotation	PF16538	NA	NA
UHGV-0130778_6	UniRef90	UniRef90_UPI00059AA7B8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0130778_6	eggNOG-mapper	445974.CLORAM_02967	NA	NA
UHGV-0130778_7	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0130778_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0130778_7	UniRef90	UniRef90_B0N8N2	DNA-binding helix-turn-helix protein	NA
UHGV-0130778_7	eggNOG-mapper	445974.CLORAM_02966	Helix-turn-helix XRE-family like proteins	NA
UHGV-0130778_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130778_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0130778_8	UniRef90	UniRef90_A0A843EA47	Helix-turn-helix transcriptional regulator	NA
UHGV-0130778_8	eggNOG-mapper	445974.CLORAM_02965	NA	NA
UHGV-0130778_8	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0130778_9	PHROG	phrog_3202	NA	unknown function
UHGV-0130778_9	UniRef90	UniRef90_UPI001C0EAE91	YjzC family protein	NA
UHGV-0130778_9	eggNOG-mapper	445974.CLORAM_02964	YjzC-like protein	NA
UHGV-0130778_9	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0130778_9	Structural annotation	PF14168	NA	NA
UHGV-0130778_11	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130778_11	UniRef90	UniRef90_A0A415ZXZ0	NA	NA
UHGV-0130778_11	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0130778_11	Structural annotation	COG2250	NA	NA
UHGV-0130778_17	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0130778_17	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130778_17	UniRef90	UniRef90_UPI001BA7CECE	AAA family ATPase	NA
UHGV-0130778_17	eggNOG-mapper	445974.CLORAM_02956	nuclear chromosome segregation	NA
UHGV-0130778_17	Pfam	PF13476	AAA domain	AAA_23
UHGV-0130778_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0130778_17	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0130778_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0130778_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0130778_18	UniRef90	UniRef90_B0N8M1	Recombinase, phage RecT family	NA
UHGV-0130778_18	Pfam	PF03837	RecT family	RecT
UHGV-0130778_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0130778_19	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0130778_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0130778_19	UniRef90	UniRef90_UPI000C1C2F33	MBL fold metallo-hydrolase	NA
UHGV-0130778_19	eggNOG-mapper	445974.CLORAM_02954	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0130778_19	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0130778_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0130778_19	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0130778_20	eggNOG-mapper	991905.SL003B_3762	NA	NA
UHGV-0130778_21	PHROG	phrog_1029	NA	unknown function
UHGV-0130778_21	eggNOG-mapper	445974.CLORAM_02952	NA	NA
UHGV-0130778_21	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0130778_22	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0130778_22	eggNOG-mapper	889378.Spiaf_1591	NA	NA
UHGV-0130778_23	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0130778_23	UniRef90	UniRef90_A0A3E3EH62	POU-specific domain-containing protein	NA
UHGV-0130778_23	eggNOG-mapper	445974.CLORAM_02950	NA	NA
UHGV-0130778_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0130778_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130778_25	UniRef90	UniRef90_A0A3E3EGF2	Single-stranded DNA-binding protein	NA
UHGV-0130778_25	eggNOG-mapper	445974.CLORAM_02948	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0130778_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0130778_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0130778_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0130778_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0130778_25	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0130778_26	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0130778_26	UniRef90	UniRef90_UPI000C817A46	NA	NA
UHGV-0130778_26	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0130778_26	Pfam	PF06356	NA	DUF1064
UHGV-0130778_26	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0130778_27	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130778_27	UniRef90	UniRef90_A0A3E3ABQ3	HNH endonuclease	NA
UHGV-0130778_27	eggNOG-mapper	999413.HMPREF1094_04725	NA	NA
UHGV-0130778_27	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0130778_27	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0130778_28	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0130778_28	UniRef90	UniRef90_A0A0C2E3P8	Methyltransferase	NA
UHGV-0130778_28	eggNOG-mapper	445974.CLORAM_02945	tRNA (guanine-N2-)-methyltransferase activity	NA
UHGV-0130778_28	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0130778_28	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0130778_28	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0130778_28	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0130778_30	Structural annotation	PF09032	NA	NA
UHGV-0130778_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0130778_31	Pfam	PF07374	NA	DUF1492
UHGV-0130778_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0130778_31	Structural annotation	PF04545, TIGR01636, COG2739	NA	NA
UHGV-0130778_33	eggNOG-mapper	553219.CAMSH0001_1671	NA	NA
UHGV-0130778_33	Structural annotation	PF09254, MF_00278, TIGR03800, COG1787, COG0311	NA	NA
UHGV-0130778_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0130778_35	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0130778_35	UniRef90	UniRef90_B0N8K3	Terminase small subunit	NA
UHGV-0130778_35	eggNOG-mapper	445974.CLORAM_02937	Terminase small subunit	NA
UHGV-0130778_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0130778_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0130778_35	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0130778_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130778_36	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0130778_36	UniRef90	UniRef90_B0N8K2	Phage terminase, large subunit, PBSX family	NA
UHGV-0130778_36	eggNOG-mapper	445974.CLORAM_02936	Phage terminase, large subunit, PBSX family	NA
UHGV-0130778_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0130778_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0130778_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0130778_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0130778_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0130778_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0130778_37	UniRef90	UniRef90_B0N8K1	Phage portal protein, SPP1 family	NA
UHGV-0130778_37	eggNOG-mapper	445974.CLORAM_02935	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0130778_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0130778_37	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0130778_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0130778_38	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0130778_38	UniRef90	UniRef90_G9QX91	Phage_Mu_F domain-containing protein	NA
UHGV-0130778_38	eggNOG-mapper	445974.CLORAM_02934	Phage Mu protein F like protein	NA
UHGV-0130778_38	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0130778_38	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0130778_38	COG	COG2369	NA	NA
UHGV-0130778_38	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0130778_39	eggNOG-mapper	445974.CLORAM_02933	NA	NA
UHGV-0130778_39	Structural annotation	PF20111	NA	NA
UHGV-0130778_41	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0130778_41	UniRef90	UniRef90_UPI0004868D22	NA	NA
UHGV-0130778_41	eggNOG-mapper	445974.CLORAM_02931	NA	NA
UHGV-0130778_41	Pfam	PF14265	NA	DUF4355
UHGV-0130778_41	Structural annotation	PF14265	NA	NA
UHGV-0130778_42	PHROG	phrog_422	major head protein	head and packaging
UHGV-0130778_42	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0130778_42	eggNOG-mapper	445974.CLORAM_02930	NA	NA
UHGV-0130778_42	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0130778_43	PHROG	phrog_2724	NA	unknown function
UHGV-0130778_43	UniRef90	UniRef90_A0A1C5TV19	Transcription termination factor Rho	NA
UHGV-0130778_44	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0130778_44	UniRef90	UniRef90_A0A1C6BLH2	Phage gp6-like head-tail connector protein	NA
UHGV-0130778_44	eggNOG-mapper	445974.CLORAM_02928	Phage gp6-like head-tail connector protein	NA
UHGV-0130778_44	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0130778_44	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0130778_45	PHROG	phrog_2168	NA	unknown function
UHGV-0130778_45	eggNOG-mapper	445974.CLORAM_02927	NA	NA
UHGV-0130778_45	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0130778_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0130778_46	UniRef90	UniRef90_B0N8J2	Phage protein, HK97 gp10 family	NA
UHGV-0130778_46	eggNOG-mapper	445974.CLORAM_02926	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0130778_46	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0130778_46	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0130778_46	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0130778_47	PHROG	phrog_78	tail terminator	connector
UHGV-0130778_47	eggNOG-mapper	445974.CLORAM_02925	NA	NA
UHGV-0130778_47	Structural annotation	PF05657	NA	NA
UHGV-0130778_48	PHROG	phrog_158	major tail protein	tail
UHGV-0130778_48	UniRef90	UniRef90_A0A1C5TB95	Phage tail protein	NA
UHGV-0130778_48	eggNOG-mapper	445974.CLORAM_02924	Phage tail tube protein, TTP	NA
UHGV-0130778_48	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0130778_48	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0130778_49	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0130778_49	UniRef90	UniRef90_UPI000487273D	NA	NA
UHGV-0130778_49	eggNOG-mapper	445974.CLORAM_02923	NA	NA
UHGV-0130778_49	Pfam	PF19591	NA	DUF6096
UHGV-0130778_49	Structural annotation	PF19591	NA	NA
UHGV-0130778_50	eggNOG-mapper	445974.CLORAM_02922	NA	NA
UHGV-0130778_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0130778_51	UniRef90	UniRef90_A0A1C5TVU6	Phage-related minor tail protein	NA
UHGV-0130778_51	eggNOG-mapper	445974.CLORAM_02921	tape measure	NA
UHGV-0130778_51	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0130778_51	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0130778_52	PHROG	phrog_1194	NA	unknown function
UHGV-0130778_52	eggNOG-mapper	445974.CLORAM_02920	NA	NA
UHGV-0130778_52	Pfam	PF20458	NA	DUF6711
UHGV-0130778_52	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0130778_53	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0130778_53	PHROG	phrog_819	tail protein	tail
UHGV-0130778_53	UniRef90	UniRef90_G9QXA6	Ig-like domain-containing protein	NA
UHGV-0130778_53	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-0130778_53	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0130778_53	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0130778_54	PHROG	phrog_372	tail protein	tail
UHGV-0130778_54	UniRef90	UniRef90_UPI000E5CC2C3	NA	NA
UHGV-0130778_54	eggNOG-mapper	445974.CLORAM_02918	NA	NA
UHGV-0130778_54	Pfam	PF05895	NA	DUF859
UHGV-0130778_54	COG	COG4675	Phage tail collar domain	NA
UHGV-0130778_54	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0130778_55	Pfam	PF12961	NA	DUF3850
UHGV-0130778_55	Structural annotation	PF12961, MF_00771, NF002617, COG3215	NA	NA
UHGV-0130778_56	PHROG	phrog_199	holin	lysis
UHGV-0130778_56	UniRef90	UniRef90_B0N8I2	Toxin secretion/phage lysis holin	NA
UHGV-0130778_56	eggNOG-mapper	445974.CLORAM_02916	Bacteriophage holin family	NA
UHGV-0130778_56	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0130778_56	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0130778_56	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0130778_57	PHROG	phrog_774	NA	unknown function
UHGV-0130778_57	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0130778_58	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0130778_58	PHROG	phrog_2649	endolysin	lysis
UHGV-0130778_58	UniRef90	UniRef90_A0A3E3ADH9	NlpC/P60 domain-containing protein	NA
UHGV-0130778_58	eggNOG-mapper	445974.CLORAM_02914	Peptidoglycan-binding domain 1 protein	NA
UHGV-0130778_58	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0130778_58	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0130778_58	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA