UHGV-0130807

Genome information

Genome length 19,292 bps

CDS count 28

Completeness 52.51% (medium-quality)

geNomad score 0.9831

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130807
vOTU ID	vOTU-040427
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_368979
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9831
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.08
Jumbo phage	No

Genome content
Genome length	19,292 bps
GC content	58.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	96.02%
Average CDS length	663.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130807_1	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0130807_1	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0130807_2	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0130807_2	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0130807_2	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0130807_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0130807_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0130807_3	PHROG	phrog_1066	NA	unknown function
UHGV-0130807_3	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0130807_3	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0130807_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0130807_4	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-0130807_4	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0130807_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0130807_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0130807_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0130807_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0130807_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0130807_5	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-0130807_5	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0130807_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0130807_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0130807_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0130807_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0130807_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0130807_6	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0130807_6	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0130807_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0130807_6	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0130807_6	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0130807_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0130807_7	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0130807_7	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0130807_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0130807_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0130807_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0130807_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0130807_8	PHROG	phrog_5223	neck protein	connector
UHGV-0130807_8	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-0130807_8	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0130807_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0130807_9	UniRef90	UniRef90_UPI001B02B074	phage head closure protein	NA
UHGV-0130807_9	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0130807_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0130807_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0130807_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0130807_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0130807_10	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0130807_10	Structural annotation	PF05657	NA	NA
UHGV-0130807_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0130807_11	Structural annotation	TIGR01725	NA	NA
UHGV-0130807_12	PHROG	phrog_88	major tail protein	tail
UHGV-0130807_12	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0130807_12	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0130807_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0130807_12	COG	COG5492	NA	NA
UHGV-0130807_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0130807_13	Structural annotation	PF11836	NA	NA
UHGV-0130807_14	PHROG	phrog_33680	NA	unknown function
UHGV-0130807_14	UniRef90	UniRef90_UPI00098F054B	phage tail protein	NA
UHGV-0130807_14	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-0130807_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0130807_14	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0130807_15	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0130807_15	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0130807_15	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0130807_15	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0130807_16	PHROG	phrog_26795	NA	unknown function
UHGV-0130807_16	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-0130807_16	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0130807_17	Structural annotation	PF18614, MF_00085, NF003076, COG0231	NA	NA
UHGV-0130807_19	Structural annotation	PF10651	NA	NA
UHGV-0130807_21	PHROG	phrog_10898	NA	unknown function
UHGV-0130807_21	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0130807_21	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0130807_21	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0130807_21	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0130807_22	PHROG	phrog_10898	NA	unknown function
UHGV-0130807_22	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0130807_24	Structural annotation	COG3506	NA	NA
UHGV-0130807_25	PHROG	phrog_937	hemolysin	other
UHGV-0130807_25	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0130807_27	UniRef90	UniRef90_A0A521IRB0	Chitin-binding type-3 domain-containing protein	NA
UHGV-0130807_27	Structural annotation	PF14600	NA	NA