UHGV-0130848

Genome information

Genome length 25,200 bps

CDS count 32

Completeness 54.10% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130848
vOTU ID	vOTU-040475
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_388260
BioSample	NA
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.72
Jumbo phage	No

Genome content
Genome length	25,200 bps
GC content	41.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	90.96%
Average CDS length	719.25 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130848_1	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0130848_1	UniRef90	UniRef90_UPI00156FEF3C	phage tail protein	NA
UHGV-0130848_1	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0130848_1	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0130848_2	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0130848_2	UniRef90	UniRef90_UPI001186E767	phage tail family protein	NA
UHGV-0130848_2	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0130848_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0130848_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0130848_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0130848_2	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0130848_3	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0130848_3	PHROG	phrog_5218	NA	unknown function
UHGV-0130848_3	UniRef90	UniRef90_UPI00191FD941	phage tail tape measure protein	NA
UHGV-0130848_3	eggNOG-mapper	411460.RUMTOR_02094	Phage-related minor tail protein	NA
UHGV-0130848_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0130848_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0130848_3	COG	COG4487	NA	NA
UHGV-0130848_3	Structural annotation	PF10145, TIGR01760, NF011901	NA	NA
UHGV-0130848_6	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0130848_6	UniRef90	UniRef90_A0A355NLS3	Bro-N domain-containing protein	NA
UHGV-0130848_6	eggNOG-mapper	573061.Clocel_3584	Prophage antirepressor	NA
UHGV-0130848_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0130848_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0130848_6	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0130848_7	PHROG	phrog_3896	NA	unknown function
UHGV-0130848_7	UniRef90	UniRef90_UPI00164BFAB0	ribbon-helix-helix protein, CopG family	NA
UHGV-0130848_7	eggNOG-mapper	397290.C810_01338	NA	NA
UHGV-0130848_8	PHROG	phrog_888	NA	unknown function
UHGV-0130848_8	UniRef90	UniRef90_A0A7Y9A5V2	SHOCT domain-containing protein	NA
UHGV-0130848_8	eggNOG-mapper	290402.Cbei_1346	NA	NA
UHGV-0130848_8	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0130848_9	PHROG	phrog_23726	NA	unknown function
UHGV-0130848_9	eggNOG-mapper	1414720.CBYM010000004_gene242	cell wall binding repeat	NA
UHGV-0130848_9	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0130848_11	PHROG	phrog_29609	NA	unknown function
UHGV-0130848_11	UniRef90	UniRef90_A0A1C5UN80	PBECR2 domain-containing protein	NA
UHGV-0130848_11	eggNOG-mapper	1280698.AUJS01000041_gene2531	NA	NA
UHGV-0130848_11	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0130848_11	Structural annotation	PF18825, COG2929	NA	NA
UHGV-0130848_12	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0130848_12	UniRef90	UniRef90_A0A829NQN8	Bro-N domain-containing protein	NA
UHGV-0130848_12	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-0130848_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0130848_12	COG	COG3617	Prophage antirepressor	NA
UHGV-0130848_12	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0130848_13	PHROG	phrog_706	NA	unknown function
UHGV-0130848_13	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-0130848_13	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-0130848_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0130848_13	Structural annotation	PF06854	NA	NA
UHGV-0130848_14	PHROG	phrog_4450	NA	unknown function
UHGV-0130848_14	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0130848_14	Pfam	PF20378	NA	DUF6673
UHGV-0130848_14	Structural annotation	PF20378	NA	NA
UHGV-0130848_15	PHROG	phrog_3099	NA	unknown function
UHGV-0130848_15	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0130848_15	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0130848_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0130848_16	PHROG	phrog_3266	tail completion	connector
UHGV-0130848_16	UniRef90	UniRef90_UPI001570657D	chloramphenicol resistance protein	NA
UHGV-0130848_16	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-0130848_16	Structural annotation	PF12691	NA	NA
UHGV-0130848_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0130848_17	UniRef90	UniRef90_UPI000E48DD75	minor capsid protein	NA
UHGV-0130848_17	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-0130848_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0130848_17	Structural annotation	PF11114	NA	NA
UHGV-0130848_18	PHROG	phrog_3366	NA	unknown function
UHGV-0130848_18	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-0130848_18	Pfam	PF20536	NA	DUF6751
UHGV-0130848_18	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0130848_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0130848_19	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0130848_20	PHROG	phrog_10972	tail fiber protein	tail
UHGV-0130848_20	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-0130848_20	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0130848_20	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0130848_20	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0130848_21	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0130848_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0130848_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0130848_22	UniRef90	UniRef90_UPI000E47EB84	phage scaffolding protein	NA
UHGV-0130848_22	eggNOG-mapper	1235799.C818_04222	Phage minor structural protein GP20	NA
UHGV-0130848_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0130848_22	Structural annotation	PF06810	NA	NA
UHGV-0130848_23	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0130848_23	eggNOG-mapper	1423758.BN55_08460	NA	NA
UHGV-0130848_23	Structural annotation	PF20111	NA	NA
UHGV-0130848_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0130848_24	UniRef90	UniRef90_UPI001CD5437D	phage minor capsid protein	NA
UHGV-0130848_24	eggNOG-mapper	742723.HMPREF9477_00909	Phage minor capsid protein 2	NA
UHGV-0130848_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0130848_24	COG	COG2369	NA	NA
UHGV-0130848_24	Structural annotation	PF06152	NA	NA
UHGV-0130848_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0130848_25	UniRef90	UniRef90_UPI00156E2A2F	phage capsid protein	NA
UHGV-0130848_25	eggNOG-mapper	33035.JPJF01000030_gene2289	NA	NA
UHGV-0130848_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0130848_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130848_26	PHROG	phrog_10250	NA	unknown function
UHGV-0130848_26	UniRef90	UniRef90_UPI001CD3A8F7	PBSX family phage terminase large subunit	NA
UHGV-0130848_26	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-0130848_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0130848_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0130848_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0130848_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0130848_27	PHROG	phrog_2412	NA	unknown function
UHGV-0130848_27	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0130848_27	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0130848_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0130848_29	UniRef90	UniRef90_A0A3E4V8N2	Sigma70_r4 domain-containing protein	NA
UHGV-0130848_29	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-0130848_29	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0130848_32	eggNOG-mapper	411470.RUMGNA_02203	NA	NA