UHGV-0130945

Genome information

Genome length 36,365 bps

CDS count 50

Completeness 89.43% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0130945
vOTU ID	vOTU-037146
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_365791
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.08
Jumbo phage	No

Genome content
Genome length	36,365 bps
GC content	57.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.38%
Average CDS length	669.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0130945_4	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0130945_4	UniRef90	UniRef90_A0A1Y3XM81	XRE family transcriptional regulator	NA
UHGV-0130945_4	eggNOG-mapper	1007096.BAGW01000023_gene157	NA	NA
UHGV-0130945_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0130945_4	Structural annotation	TIGR03070	NA	NA
UHGV-0130945_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130945_8	Structural annotation	PF19885	NA	NA
UHGV-0130945_12	PHROG	phrog_27776	NA	unknown function
UHGV-0130945_12	UniRef90	UniRef90_A0A6H1ZE89	Putative tail protein	NA
UHGV-0130945_12	eggNOG-mapper	1382356.JQMP01000004_gene51	NA	NA
UHGV-0130945_12	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0130945_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0130945_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130945_13	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0130945_13	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0130945_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0130945_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0130945_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0130945_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0130945_13	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0130945_14	PHROG	phrog_16304	NA	unknown function
UHGV-0130945_14	UniRef90	UniRef90_L1Q6L3	NA	NA
UHGV-0130945_14	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0130945_14	Pfam	PF19808	NA	DUF6291
UHGV-0130945_14	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0130945_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0130945_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0130945_15	UniRef90	UniRef90_A0A4Z0Y679	DNA replication protein DnaC	NA
UHGV-0130945_15	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0130945_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0130945_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0130945_15	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0130945_16	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0130945_16	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0130945_18	Structural annotation	NF041588	NA	NA
UHGV-0130945_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0130945_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0130945_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0130945_23	UniRef90	UniRef90_A0A645DSK7	Single-stranded DNA-binding protein	NA
UHGV-0130945_23	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-0130945_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0130945_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0130945_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0130945_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0130945_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0130945_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0130945_24	UniRef90	UniRef90_A0A173SKQ6	Holliday junction resolvase	NA
UHGV-0130945_24	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0130945_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0130945_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0130945_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0130945_25	eggNOG-mapper	226185.EF_2307	SNF2 family N-terminal domain	NA
UHGV-0130945_25	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-0130945_31	PHROG	phrog_443	holin	lysis
UHGV-0130945_31	UniRef90	UniRef90_UPI001B3C9F75	holin	NA
UHGV-0130945_31	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0130945_31	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0130945_31	Structural annotation	PF16945	NA	NA
UHGV-0130945_32	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0130945_32	PHROG	phrog_1794	amidase	lysis
UHGV-0130945_32	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0130945_32	eggNOG-mapper	1235793.C809_04649	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-0130945_32	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0130945_32	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0130945_32	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0130945_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-0130945_34	UniRef90	UniRef90_UPI00082A3F03	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0130945_34	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-0130945_34	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0130945_34	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0130945_36	PHROG	phrog_156	portal protein	head and packaging
UHGV-0130945_36	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0130945_36	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0130945_39	PHROG	phrog_4105	NA	unknown function
UHGV-0130945_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0130945_41	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0130945_41	UniRef90	UniRef90_A0A810QAS9	Phage terminase large subunit	NA
UHGV-0130945_41	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0130945_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0130945_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0130945_42	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0130945_42	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0130945_42	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0130945_43	eggNOG-mapper	693746.OBV_01730	NA	NA
UHGV-0130945_43	Structural annotation	PF11650	NA	NA
UHGV-0130945_44	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0130945_45	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0130945_45	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0130945_46	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0130945_47	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0130945_47	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0130945_47	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0130945_47	eggNOG-mapper	198467.NP92_02765	COG3617 Prophage antirepressor	NA
UHGV-0130945_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0130945_47	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0130945_47	COG	COG3617	Prophage antirepressor	NA
UHGV-0130945_47	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0130945_49	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0130945_49	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0130945_49	Structural annotation	PF01402, COG4710	NA	NA