UHGV-0131037

Genome information

Genome length 57,383 bps

CDS count 93

Completeness 100.00% (complete)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131037
vOTU ID	vOTU-045929
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_386225
BioSample	SAMN04261269
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.54
Jumbo phage	No

Genome content
Genome length	57,383 bps
GC content	48.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	83.70%
Average CDS length	518.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131037_1	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0131037_1	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0131037_1	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0131037_1	COG	COG5410	NA	NA
UHGV-0131037_1	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0131037_3	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0131037_3	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0131037_3	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0131037_3	eggNOG-mapper	411469.EUBHAL_01860	Resolvase, N terminal domain	NA
UHGV-0131037_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0131037_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0131037_3	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0131037_6	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0131037_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0131037_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0131037_7	UniRef90	UniRef90_A0A1Y4EUA0	Bro-N domain-containing protein	NA
UHGV-0131037_7	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0131037_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0131037_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0131037_7	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0131037_8	eggNOG-mapper	706433.HMPREF9430_00388	NA	NA
UHGV-0131037_8	Structural annotation	PF11906, PF09624, MF_00791, NF038353, NF033903, COG5633	NA	NA
UHGV-0131037_9	UniRef90	UniRef90_A0A7U9PG50	tRNA_anti	NA
UHGV-0131037_9	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0131037_9	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0131037_9	Structural annotation	PF12869, MF_00720, TIGR03943, COG5235	NA	NA
UHGV-0131037_14	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0131037_14	UniRef90	UniRef90_A0A1Y3SW45	RepA_N domain-containing protein (Fragment)	NA
UHGV-0131037_14	eggNOG-mapper	411468.CLOSCI_02792	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0131037_14	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-0131037_14	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-0131037_15	PHROG	phrog_3886	NA	unknown function
UHGV-0131037_15	eggNOG-mapper	742735.HMPREF9467_00880	NA	NA
UHGV-0131037_16	KOfam	K03744	lemA; LemA protein	NA
UHGV-0131037_16	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0131037_16	UniRef90	UniRef90_A0A6N9P3N6	LemA family protein	NA
UHGV-0131037_16	eggNOG-mapper	657322.FPR_23420	LemA family	NA
UHGV-0131037_16	Pfam	PF04011	LemA family	LemA
UHGV-0131037_16	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0131037_16	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0131037_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0131037_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0131037_17	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0131037_17	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0131037_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0131037_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0131037_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0131037_18	Pfam	PF19808	NA	DUF6291
UHGV-0131037_18	Structural annotation	PF19808	NA	NA
UHGV-0131037_19	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0131037_19	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0131037_19	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0131037_19	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0131037_19	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0131037_23	Structural annotation	NF041588	NA	NA
UHGV-0131037_29	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0131037_29	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0131037_29	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0131037_29	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0131037_30	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0131037_31	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0131037_31	PHROG	phrog_200	lipoprotein	other
UHGV-0131037_31	UniRef90	UniRef90_D4KCF4	Membrane protease subunits, stomatin/prohibitin homologs	NA
UHGV-0131037_31	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-0131037_31	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0131037_31	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0131037_31	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0131037_32	Structural annotation	PF16677	NA	NA
UHGV-0131037_37	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0131037_37	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0131037_37	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0131037_37	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0131037_39	PHROG	phrog_35094	NA	unknown function
UHGV-0131037_39	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0131037_40	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0131037_40	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0131037_40	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0131037_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0131037_40	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0131037_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0131037_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0131037_41	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0131037_41	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0131037_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0131037_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0131037_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0131037_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0131037_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0131037_42	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0131037_42	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0131037_42	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0131037_42	Pfam	PF04404	ERF superfamily	ERF
UHGV-0131037_42	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0131037_43	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0131037_43	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0131037_43	Structural annotation	PF13451	NA	NA
UHGV-0131037_45	UniRef90	UniRef90_X1J2I6	ATP-cone domain-containing protein (Fragment)	NA
UHGV-0131037_45	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0131037_45	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0131037_45	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0131037_46	Structural annotation	PF14143	NA	NA
UHGV-0131037_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0131037_47	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0131037_49	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0131037_49	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0131037_51	Structural annotation	PF10922	NA	NA
UHGV-0131037_52	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0131037_52	UniRef90	UniRef90_UPI001D011E8C	XRE family transcriptional regulator	NA
UHGV-0131037_52	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0131037_52	Structural annotation	TIGR03070	NA	NA
UHGV-0131037_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0131037_53	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0131037_53	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0131037_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0131037_53	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0131037_53	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0131037_57	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0131037_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131037_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0131037_57	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0131037_59	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0131037_59	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0131037_59	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0131037_59	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0131037_59	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0131037_59	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0131037_59	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0131037_61	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0131037_61	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0131037_61	UniRef90	UniRef90_A0A349QN03	Chromosome partitioning protein ParA	NA
UHGV-0131037_61	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0131037_61	Pfam	PF13614	AAA domain	AAA_31
UHGV-0131037_61	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0131037_61	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0131037_63	Structural annotation	PF07878	NA	NA
UHGV-0131037_64	Structural annotation	NF010188	NA	NA
UHGV-0131037_65	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0131037_66	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0131037_67	PHROG	phrog_16490	NA	unknown function
UHGV-0131037_67	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0131037_70	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0131037_70	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131037_70	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0131037_70	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0131037_72	PHROG	phrog_15303	NA	unknown function
UHGV-0131037_72	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0131037_74	KOfam	K07273	acm; lysozyme	NA
UHGV-0131037_74	PHROG	phrog_291	endolysin	lysis
UHGV-0131037_74	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0131037_74	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0131037_74	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0131037_74	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0131037_74	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0131037_75	PHROG	phrog_1382	NA	unknown function
UHGV-0131037_75	eggNOG-mapper	1410650.JHWL01000003_gene2818	NA	NA
UHGV-0131037_77	PHROG	phrog_9534	head protein	head and packaging
UHGV-0131037_77	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0131037_77	Structural annotation	MF_04106	NA	NA
UHGV-0131037_78	PHROG	phrog_18725	NA	unknown function
UHGV-0131037_78	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0131037_79	PHROG	phrog_13879	NA	unknown function
UHGV-0131037_79	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0131037_79	Pfam	PF19789	NA	DUF6273
UHGV-0131037_79	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0131037_80	PHROG	phrog_1194	NA	unknown function
UHGV-0131037_80	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0131037_80	Pfam	PF20458	NA	DUF6711
UHGV-0131037_80	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0131037_81	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0131037_81	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0131037_81	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0131037_82	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0131037_83	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0131037_83	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0131037_83	Pfam	PF16478	NA	DUF5055
UHGV-0131037_83	Structural annotation	PF16478	NA	NA
UHGV-0131037_84	PHROG	phrog_158	major tail protein	tail
UHGV-0131037_84	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0131037_84	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0131037_84	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0131037_85	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0131037_87	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0131037_88	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0131037_88	Structural annotation	TIGR01560	NA	NA
UHGV-0131037_89	PHROG	phrog_29	major head protein	head and packaging
UHGV-0131037_89	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0131037_89	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0131037_89	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0131037_89	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0131037_92	PHROG	phrog_64	portal protein	head and packaging
UHGV-0131037_92	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0131037_92	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0131037_92	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0131037_92	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA