UHGV-0131095

Genome information

Genome length 38,530 bps

CDS count 67

Completeness 96.87% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131095
vOTU ID	vOTU-062727
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_376165
BioSample	SAMN03653687
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.87% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.1
Jumbo phage	No

Genome content
Genome length	38,530 bps
GC content	35.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.37%
Average CDS length	523.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131095_2	PHROG	phrog_806	NA	unknown function
UHGV-0131095_2	UniRef90	UniRef90_A0A3R6CWF6	NA	NA
UHGV-0131095_2	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0131095_2	Pfam	PF11611	NA	DUF4352
UHGV-0131095_2	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0131095_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0131095_4	UniRef90	UniRef90_UPI0008F8BD70	helix-turn-helix transcriptional regulator	NA
UHGV-0131095_4	eggNOG-mapper	1408321.JNJD01000010_gene1463	Helix-turn-helix XRE-family like proteins	NA
UHGV-0131095_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131095_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0131095_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0131095_6	PHROG	phrog_5182	endolysin	lysis
UHGV-0131095_6	UniRef90	UniRef90_D9TLN4	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0131095_6	eggNOG-mapper	580327.Tthe_0810	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0131095_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0131095_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0131095_6	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0131095_7	PHROG	phrog_1129	holin	lysis
UHGV-0131095_7	UniRef90	UniRef90_A0A6P1TJX6	Holin	NA
UHGV-0131095_7	eggNOG-mapper	1449050.JNLE01000005_gene4824	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0131095_7	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0131095_7	Structural annotation	PF06946	NA	NA
UHGV-0131095_8	PHROG	phrog_1863	NA	unknown function
UHGV-0131095_8	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0131095_8	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0131095_13	PHROG	phrog_18190	NA	unknown function
UHGV-0131095_13	UniRef90	UniRef90_A0A0H5SHD2	Peptidase S74 domain-containing protein	NA
UHGV-0131095_13	eggNOG-mapper	1449050.JNLE01000003_gene3879	NA	NA
UHGV-0131095_13	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0131095_14	PHROG	phrog_1194	NA	unknown function
UHGV-0131095_14	eggNOG-mapper	1449050.JNLE01000003_gene3880	NA	NA
UHGV-0131095_14	Pfam	PF20458	NA	DUF6711
UHGV-0131095_14	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0131095_15	PHROG	phrog_37543	NA	unknown function
UHGV-0131095_15	UniRef90	UniRef90_A0A7Z7G584	Phage-related protein	NA
UHGV-0131095_15	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-0131095_15	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0131095_16	PHROG	phrog_706	NA	unknown function
UHGV-0131095_16	UniRef90	UniRef90_UPI00051C36A4	Gp15 family bacteriophage protein	NA
UHGV-0131095_16	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0131095_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0131095_16	Structural annotation	PF06854	NA	NA
UHGV-0131095_17	PHROG	phrog_11299	NA	unknown function
UHGV-0131095_17	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0131095_17	Structural annotation	PF10666	NA	NA
UHGV-0131095_18	PHROG	phrog_3099	NA	unknown function
UHGV-0131095_18	UniRef90	UniRef90_A0A7M3SAI1	S-l_SbsC_C domain-containing protein	NA
UHGV-0131095_18	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0131095_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0131095_19	PHROG	phrog_3266	tail completion	connector
UHGV-0131095_19	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0131095_19	Structural annotation	PF20765	NA	NA
UHGV-0131095_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0131095_20	UniRef90	UniRef90_UPI000691B8FF	minor capsid protein	NA
UHGV-0131095_20	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0131095_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0131095_20	Structural annotation	PF11114	NA	NA
UHGV-0131095_21	PHROG	phrog_3366	NA	unknown function
UHGV-0131095_21	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-0131095_21	Pfam	PF20536	NA	DUF6751
UHGV-0131095_21	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0131095_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0131095_22	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0131095_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0131095_23	UniRef90	UniRef90_A0A4R2LD59	HK97 family phage major capsid protein	NA
UHGV-0131095_23	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0131095_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0131095_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0131095_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0131095_23	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0131095_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0131095_24	UniRef90	UniRef90_A0A1C5P0Y8	Phage minor structural protein GP20	NA
UHGV-0131095_24	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0131095_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0131095_24	Structural annotation	PF06810	NA	NA
UHGV-0131095_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0131095_25	UniRef90	UniRef90_A0A7C6P0F7	Minor capsid protein	NA
UHGV-0131095_25	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0131095_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0131095_25	COG	COG2369	NA	NA
UHGV-0131095_25	Structural annotation	PF06152	NA	NA
UHGV-0131095_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0131095_28	UniRef90	UniRef90_UPI0019219F98	phage portal protein	NA
UHGV-0131095_28	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0131095_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0131095_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0131095_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0131095_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0131095_29	UniRef90	UniRef90_A0A412G479	PBSX family phage terminase large subunit	NA
UHGV-0131095_29	eggNOG-mapper	999413.HMPREF1094_00221	Phage terminase, large subunit, PBSX family	NA
UHGV-0131095_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0131095_29	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0131095_30	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0131095_30	UniRef90	UniRef90_A0A848BIX5	Sigma70_r4_2 domain-containing protein	NA
UHGV-0131095_30	eggNOG-mapper	1292035.H476_1020	DNA packaging	NA
UHGV-0131095_30	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0131095_30	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0131095_30	COG	COG5484	NA	NA
UHGV-0131095_30	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0131095_32	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-0131095_32	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0131095_32	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0131095_35	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0131095_35	UniRef90	UniRef90_A0A3R6E6N3	Radical SAM protein	NA
UHGV-0131095_35	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0131095_35	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0131095_36	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0131095_36	UniRef90	UniRef90_UPI000940FECE	radical SAM protein	NA
UHGV-0131095_36	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0131095_36	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0131095_38	PHROG	phrog_10312	NA	unknown function
UHGV-0131095_39	PHROG	phrog_8684	NA	unknown function
UHGV-0131095_39	UniRef90	UniRef90_A0A1C3F1V7	NA	NA
UHGV-0131095_39	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0131095_39	Pfam	PF09643	YopX protein	YopX
UHGV-0131095_39	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0131095_39	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0131095_44	PHROG	phrog_10714	NA	unknown function
UHGV-0131095_45	eggNOG-mapper	411470.RUMGNA_02044	NA	NA
UHGV-0131095_45	Structural annotation	PF02185	NA	NA
UHGV-0131095_46	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0131095_46	UniRef90	UniRef90_UPI000BBBB89D	SAM-dependent methyltransferase	NA
UHGV-0131095_46	eggNOG-mapper	1497679.EP56_08455	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0131095_46	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0131095_46	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0131095_46	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0131095_46	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0131095_47	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0131095_47	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0131095_47	UniRef90	UniRef90_A0A6N7WPG8	Methyltransferase	NA
UHGV-0131095_47	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0131095_47	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0131095_47	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0131095_47	COG	COG0863	DNA modification methylase	NA
UHGV-0131095_47	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0131095_48	eggNOG-mapper	1131462.DCF50_p1314	NA	NA
UHGV-0131095_50	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0131095_50	UniRef90	UniRef90_A0A3B8SUV3	DnaB_2 domain-containing protein	NA
UHGV-0131095_50	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0131095_50	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0131095_50	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0131095_51	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0131095_51	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0131095_51	UniRef90	UniRef90_A0A1Q6UYH5	Endodeoxyribonuclease RusA	NA
UHGV-0131095_51	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0131095_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0131095_51	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0131095_52	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0131095_52	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0131095_53	PHROG	phrog_398	NA	unknown function
UHGV-0131095_53	UniRef90	UniRef90_UPI0011780B2F	putative HNHc nuclease	NA
UHGV-0131095_53	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0131095_53	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0131095_53	Structural annotation	PF16784	NA	NA
UHGV-0131095_54	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0131095_54	eggNOG-mapper	1238184.CM001792_gene2549	NA	NA
UHGV-0131095_54	Structural annotation	PF09588, TIGR04328, COG5377	NA	NA
UHGV-0131095_55	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0131095_55	UniRef90	UniRef90_UPI000C85F174	NA	NA
UHGV-0131095_55	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0131095_55	Pfam	PF06378	NA	DUF1071
UHGV-0131095_55	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0131095_60	PHROG	phrog_4400	NA	unknown function
UHGV-0131095_60	eggNOG-mapper	357809.Cphy_2990	NA	NA
UHGV-0131095_60	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0131095_60	Structural annotation	PF01743, MF_00957, NF008634, COG0617	NA	NA
UHGV-0131095_61	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0131095_61	UniRef90	UniRef90_A0A173RHP1	ORF6C domain	NA
UHGV-0131095_61	eggNOG-mapper	476272.RUMHYD_03311	ORF6C domain	NA
UHGV-0131095_61	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0131095_61	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0131095_61	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0131095_61	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-0131095_65	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0131095_66	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0131095_66	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0131095_66	UniRef90	UniRef90_A0A1M7NI43	Anti-repressor protein	NA
UHGV-0131095_66	eggNOG-mapper	552396.HMPREF0863_00756	P22_AR N-terminal domain	NA
UHGV-0131095_66	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0131095_66	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0131095_66	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA