UHGV-0131152

Genome information

vOTU vOTU-020099

Genome length 23,566 bps

CDS count 41

Completeness 61.69% (medium-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131152
vOTU ID	vOTU-020099
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_387196
BioSample	SAMN04261392
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.3
Jumbo phage	No

Genome content
Genome length	23,566 bps
GC content	41.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	84.52%
Average CDS length	489.51 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131152_1	eggNOG-mapper	1235801.C822_00660	Phage minor structural protein GP20	NA
UHGV-0131152_2	PHROG	phrog_27123	NA	unknown function
UHGV-0131152_3	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0131152_3	UniRef90	UniRef90_F7R2Z7	Minor capsid protein	NA
UHGV-0131152_3	eggNOG-mapper	1423767.BALU01000006_gene776	Phage minor capsid protein 2	NA
UHGV-0131152_3	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0131152_3	Structural annotation	PF06152	NA	NA
UHGV-0131152_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0131152_4	UniRef90	UniRef90_A0A0R2A9I7	Minor structural protein gp61	NA
UHGV-0131152_4	eggNOG-mapper	1399941.U3PCP8_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0131152_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0131152_4	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0131152_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0131152_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0131152_5	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0131152_5	UniRef90	UniRef90_F7R2Z9	Phage terminase, large subunit, PBSX family	NA
UHGV-0131152_5	eggNOG-mapper	12348.A4L7R3_BPLLH	Pfam:Terminase_3C	NA
UHGV-0131152_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0131152_5	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0131152_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0131152_5	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0131152_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0131152_6	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0131152_6	UniRef90	UniRef90_F7R300	Terminase small subunit	NA
UHGV-0131152_6	eggNOG-mapper	438780.D2KRB6_9CAUD	Terminase small subunit	NA
UHGV-0131152_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0131152_6	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0131152_7	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0131152_7	UniRef90	UniRef90_A0A8B2Z7Q9	NA	NA
UHGV-0131152_7	eggNOG-mapper	220668.lp_2426	Phage transcriptional regulator, ArpU family	NA
UHGV-0131152_7	Pfam	PF07374	NA	DUF1492
UHGV-0131152_7	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0131152_7	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0131152_9	Structural annotation	COG2771	NA	NA
UHGV-0131152_10	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0131152_10	UniRef90	UniRef90_F7R304	NA	NA
UHGV-0131152_10	eggNOG-mapper	525309.HMPREF0494_1798	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0131152_10	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0131152_10	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0131152_10	Structural annotation	PF01596, TIGR02469, COG3963	NA	NA
UHGV-0131152_11	KOfam	K14059	int; integrase	NA
UHGV-0131152_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0131152_11	UniRef90	UniRef90_A0A0G8GAU9	Phage integrase	NA
UHGV-0131152_11	eggNOG-mapper	525309.HMPREF0494_1797	Belongs to the 'phage' integrase family	NA
UHGV-0131152_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0131152_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0131152_11	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0131152_12	UniRef90	UniRef90_G2SN36	Putative trasposase	NA
UHGV-0131152_12	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0131152_19	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-0131152_19	UniRef90	UniRef90_UPI000AA922A2	MazG-like family protein	NA
UHGV-0131152_19	eggNOG-mapper	888049.HMPREF8578_0682	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0131152_19	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0131152_19	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0131152_23	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0131152_23	UniRef90	UniRef90_UPI0018F05BC7	NA	NA
UHGV-0131152_23	eggNOG-mapper	1069534.LRC_07200	NA	NA
UHGV-0131152_23	Pfam	PF06356	NA	DUF1064
UHGV-0131152_23	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0131152_24	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0131152_24	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0131152_24	UniRef90	UniRef90_A0A8B2Z0Z9	DnaD domain protein	NA
UHGV-0131152_24	eggNOG-mapper	1423724.BAMM01000012_gene1382	NA	NA
UHGV-0131152_24	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0131152_24	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0131152_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0131152_24	Structural annotation	PF02295, TIGR01446, TIGR00373, COG3935	NA	NA
UHGV-0131152_25	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0131152_25	UniRef90	UniRef90_A0A8B2Z6V4	Single-stranded DNA-binding protein	NA
UHGV-0131152_25	eggNOG-mapper	575594.ACOH01000003_gene815	ERF superfamily	NA
UHGV-0131152_25	Pfam	PF04404	ERF superfamily	ERF
UHGV-0131152_25	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0131152_26	PHROG	phrog_674	NA	unknown function
UHGV-0131152_26	UniRef90	UniRef90_A0A8B2Z4L0	NA	NA
UHGV-0131152_26	eggNOG-mapper	936140.AEOT01000013_gene366	NA	NA
UHGV-0131152_26	Pfam	PF07083	NA	DUF1351
UHGV-0131152_26	Structural annotation	PF07083	NA	NA
UHGV-0131152_27	PHROG	phrog_24289	NA	unknown function
UHGV-0131152_29	PHROG	phrog_23441	NA	unknown function
UHGV-0131152_29	UniRef90	UniRef90_A0A8B2YZ69	tRNA (Guanine-N1)-methyltransferase	NA
UHGV-0131152_30	PHROG	phrog_24289	NA	unknown function
UHGV-0131152_31	PHROG	phrog_7989	NA	unknown function
UHGV-0131152_32	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0131152_32	UniRef90	UniRef90_A0A6A8IC72	ORF6N domain-containing protein	NA
UHGV-0131152_32	eggNOG-mapper	1423775.BAMN01000009_gene432	ORF6N domain	NA
UHGV-0131152_32	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0131152_32	COG	COG1737	DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains	NA
UHGV-0131152_32	Structural annotation	PF10543, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0131152_33	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0131152_33	UniRef90	UniRef90_A0A837IXL0	HTH cro/C1-type domain-containing protein	NA
UHGV-0131152_33	eggNOG-mapper	1314.HKU360_01664	Helix-turn-helix XRE-family like proteins	NA
UHGV-0131152_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131152_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0131152_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0131152_34	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0131152_34	UniRef90	UniRef90_A0A837IUK9	Protein product	NA
UHGV-0131152_34	eggNOG-mapper	764299.STRIC_0070	Peptidase S24-like	NA
UHGV-0131152_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131152_34	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0131152_34	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-0131152_35	PHROG	phrog_87	metallo-protease	other
UHGV-0131152_35	UniRef90	UniRef90_A0A837ISY4	Prophage repressor-like protein	NA
UHGV-0131152_35	eggNOG-mapper	1423815.BACR01000010_gene590	Zn peptidase	NA
UHGV-0131152_35	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0131152_35	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0131152_35	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0131152_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0131152_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0131152_38	UniRef90	UniRef90_A0A231Q1Y9	XRE family transcriptional regulator	NA
UHGV-0131152_38	eggNOG-mapper	324831.LGAS_0575	Helix-turn-helix domain	NA
UHGV-0131152_38	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0131152_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131152_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0131152_38	Structural annotation	PF12844, MF_00535, NF041575, COG1396	NA	NA
UHGV-0131152_39	PHROG	phrog_87	metallo-protease	other
UHGV-0131152_39	UniRef90	UniRef90_UPI0019563039	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0131152_39	eggNOG-mapper	947980.E9LUL3_9CAUD	NA	NA
UHGV-0131152_39	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0131152_39	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0131152_40	KOfam	K14059	int; integrase	NA
UHGV-0131152_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0131152_40	UniRef90	UniRef90_E7FPC8	Site-specific recombinase, phage integrase family	NA
UHGV-0131152_40	eggNOG-mapper	1423758.BN55_04135	Belongs to the 'phage' integrase family	NA
UHGV-0131152_40	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0131152_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0131152_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0131152_40	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0131152_41	eggNOG-mapper	1069534.LRC_10110	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	NA
UHGV-0131152_41	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA