UHGV-0131281

Genome information

Genome length 36,483 bps

CDS count 53

Completeness 97.20% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131281
vOTU ID	vOTU-075259
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_358289
BioSample	SAMN02675515
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.20% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.08
Jumbo phage	No

Genome content
Genome length	36,483 bps
GC content	49.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.20%
Average CDS length	617.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131281_1	PHROG	phrog_31660	tail fiber protein	tail
UHGV-0131281_1	UniRef90	UniRef90_A0A269TCK4	Mtd_N domain-containing protein	NA
UHGV-0131281_1	eggNOG-mapper	753085.F4YCS2_9CAUD	NA	NA
UHGV-0131281_1	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0131281_2	PHROG	phrog_697	structural protein	head and packaging
UHGV-0131281_2	UniRef90	UniRef90_A0A269TCG6	Mtd_N domain-containing protein	NA
UHGV-0131281_2	eggNOG-mapper	696281.Desru_3489	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0131281_2	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0131281_2	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0131281_2	Structural annotation	PF18454	NA	NA
UHGV-0131281_4	PHROG	phrog_1084	NA	unknown function
UHGV-0131281_4	eggNOG-mapper	1273103.NM10_00979	NA	NA
UHGV-0131281_4	Structural annotation	PF10651	NA	NA
UHGV-0131281_5	PHROG	phrog_1863	NA	unknown function
UHGV-0131281_8	KOfam	K14059	int; integrase	NA
UHGV-0131281_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0131281_8	UniRef90	UniRef90_S7J9K9	Site-specific tyrosine recombinase XerC	NA
UHGV-0131281_8	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0131281_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0131281_8	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0131281_8	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0131281_9	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0131281_9	UniRef90	UniRef90_UPI000486D8B9	phage tail protein	NA
UHGV-0131281_9	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0131281_9	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0131281_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0131281_9	Structural annotation	PF12571	NA	NA
UHGV-0131281_10	PHROG	phrog_521	tail protein	tail
UHGV-0131281_10	UniRef90	UniRef90_A0A848EVX3	NA	NA
UHGV-0131281_10	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-0131281_10	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0131281_10	COG	COG3778	NA	NA
UHGV-0131281_10	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0131281_11	PHROG	phrog_6	baseplate protein	tail
UHGV-0131281_11	UniRef90	UniRef90_A0A848BRV6	Baseplate J/gp47 family protein	NA
UHGV-0131281_11	eggNOG-mapper	1273103.NM10_00999	Baseplate J-like protein	NA
UHGV-0131281_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0131281_11	COG	COG3299	NA	NA
UHGV-0131281_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0131281_12	PHROG	phrog_120	baseplate protein	tail
UHGV-0131281_12	UniRef90	UniRef90_A0A2S0M4I9	NA	NA
UHGV-0131281_12	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0131281_12	Pfam	PF10934	NA	DUF2634
UHGV-0131281_12	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0131281_12	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0131281_13	PHROG	phrog_579	NA	unknown function
UHGV-0131281_13	UniRef90	UniRef90_A0A2S0M4I6	NA	NA
UHGV-0131281_13	eggNOG-mapper	1123250.KB908414_gene2116	NA	NA
UHGV-0131281_13	Pfam	PF10844	NA	DUF2577
UHGV-0131281_13	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0131281_14	PHROG	phrog_400	tail protein	tail
UHGV-0131281_14	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0131281_14	eggNOG-mapper	568816.Acin_1962	NLP P60 protein	NA
UHGV-0131281_14	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0131281_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0131281_15	PHROG	phrog_5184	NA	unknown function
UHGV-0131281_15	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0131281_15	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0131281_15	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0131281_15	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0131281_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0131281_16	UniRef90	UniRef90_UPI001645A310	phage tail tape measure protein	NA
UHGV-0131281_16	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0131281_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0131281_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0131281_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0131281_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0131281_18	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0131281_18	UniRef90	UniRef90_A0A3N1XNY1	XkdN-like tail assembly chaperone	NA
UHGV-0131281_18	eggNOG-mapper	1232428.CAVO010000003_gene1002	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0131281_18	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0131281_18	Structural annotation	PF08890	NA	NA
UHGV-0131281_19	PHROG	phrog_365	tail protein	tail
UHGV-0131281_19	UniRef90	UniRef90_A0A2S0M4K4	Phage portal protein	NA
UHGV-0131281_19	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0131281_19	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0131281_19	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0131281_20	PHROG	phrog_1480	tail sheath	tail
UHGV-0131281_20	UniRef90	UniRef90_UPI0016491346	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0131281_20	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0131281_20	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0131281_20	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0131281_20	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0131281_21	PHROG	phrog_525	NA	unknown function
UHGV-0131281_21	Pfam	PF20765	NA	DUF6838
UHGV-0131281_21	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0131281_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0131281_22	UniRef90	UniRef90_UPI001645C731	HK97 gp10 family phage protein	NA
UHGV-0131281_22	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0131281_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0131281_22	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0131281_23	PHROG	phrog_25	head closure Hc1	connector
UHGV-0131281_23	UniRef90	UniRef90_UPI001648A1FB	phage head closure protein	NA
UHGV-0131281_23	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0131281_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0131281_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0131281_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0131281_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0131281_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0131281_24	UniRef90	UniRef90_UPI00195DB364	head-tail connector protein	NA
UHGV-0131281_24	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-0131281_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0131281_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0131281_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0131281_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0131281_25	UniRef90	UniRef90_A0A412CI12	Phage major capsid protein	NA
UHGV-0131281_25	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0131281_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0131281_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0131281_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0131281_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0131281_26	KOfam	K06904	NA	NA
UHGV-0131281_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0131281_26	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-0131281_26	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-0131281_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0131281_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0131281_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0131281_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0131281_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0131281_27	UniRef90	UniRef90_UPI00142FCB51	phage portal protein	NA
UHGV-0131281_27	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0131281_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0131281_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0131281_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0131281_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0131281_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0131281_28	UniRef90	UniRef90_UPI00164586AB	terminase large subunit	NA
UHGV-0131281_28	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-0131281_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0131281_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0131281_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0131281_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0131281_29	PHROG	phrog_1066	NA	unknown function
UHGV-0131281_29	UniRef90	UniRef90_A0A2K4DHE9	NA	NA
UHGV-0131281_29	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0131281_29	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0131281_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0131281_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0131281_30	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0131281_31	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0131281_31	UniRef90	UniRef90_UPI000930BD90	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0131281_31	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0131281_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0131281_31	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0131281_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0131281_32	eggNOG-mapper	1064535.MELS_1085	NA	NA
UHGV-0131281_32	Structural annotation	PF21578	NA	NA
UHGV-0131281_33	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0131281_33	UniRef90	UniRef90_A0A2S7ZCM0	NA	NA
UHGV-0131281_33	eggNOG-mapper	883156.HMPREF9282_01229	NA	NA
UHGV-0131281_33	Pfam	PF14359	NA	DUF4406
UHGV-0131281_35	PHROG	phrog_4074	NA	unknown function
UHGV-0131281_35	UniRef90	UniRef90_A0A0H3KJ17	Putative bacteriophage protein	NA
UHGV-0131281_35	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-0131281_35	Structural annotation	TIGR04550	NA	NA
UHGV-0131281_40	PHROG	phrog_25045	NA	unknown function
UHGV-0131281_40	UniRef90	UniRef90_A0A2S0MA59	LysM domain-containing protein	NA
UHGV-0131281_40	eggNOG-mapper	1111454.HMPREF1250_0025	LysM domain	NA
UHGV-0131281_40	Pfam	PF01476	LysM domain	LysM
UHGV-0131281_40	COG	COG1388	LysM repeat	NA
UHGV-0131281_40	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0131281_41	eggNOG-mapper	1064535.MELS_1077	transposase activity	NA
UHGV-0131281_41	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0131281_43	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0131281_43	UniRef90	UniRef90_G0VPB9	Helix-turn-helix domain protein	NA
UHGV-0131281_43	eggNOG-mapper	1064535.MELS_1075	Helix-turn-helix XRE-family like proteins	NA
UHGV-0131281_43	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0131281_43	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0131281_43	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0131281_48	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-0131281_48	UniRef90	UniRef90_A0A848EVM8	Rha family transcriptional regulator	NA
UHGV-0131281_48	eggNOG-mapper	1273103.NM10_01194	Phage regulatory protein	NA
UHGV-0131281_48	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0131281_48	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0131281_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0131281_48	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0131281_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0131281_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0131281_50	UniRef90	UniRef90_S7HSI7	LexA repressor family protein	NA
UHGV-0131281_50	eggNOG-mapper	1273103.NM10_02407	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0131281_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131281_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0131281_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0131281_50	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0131281_51	PHROG	phrog_1847	NA	unknown function
UHGV-0131281_51	UniRef90	UniRef90_G0VPB4	T5orf172 domain-containing protein	NA
UHGV-0131281_51	eggNOG-mapper	1064535.MELS_1070	NA	NA
UHGV-0131281_51	Pfam	PF13250	NA	DUF4041
UHGV-0131281_51	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0131281_51	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0131281_51	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0131281_53	KOfam	K14059	int; integrase	NA
UHGV-0131281_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0131281_53	UniRef90	UniRef90_G0VPB0	Site-specific recombinase	NA
UHGV-0131281_53	eggNOG-mapper	1064535.MELS_1066	Phage integrase family	NA
UHGV-0131281_53	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0131281_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0131281_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0131281_53	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA