UHGV-0131285

Genome information

Genome length 31,642 bps

CDS count 42

Completeness 91.23% (high-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131285
vOTU ID	vOTU-072185
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_358238
BioSample	SAMN02676187
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.57
Jumbo phage	No

Genome content
Genome length	31,642 bps
GC content	38.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	86.29%
Average CDS length	654.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131285_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0131285_1	UniRef90	UniRef90_UPI001F1EE375	phage tail protein	NA
UHGV-0131285_1	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-0131285_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0131285_1	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0131285_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0131285_1	COG	COG4926	Phage-related protein	NA
UHGV-0131285_1	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0131285_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0131285_2	UniRef90	UniRef90_UPI0011B407D4	phage tail family protein	NA
UHGV-0131285_2	eggNOG-mapper	1423775.BAMN01000009_gene386	Phage tail protein	NA
UHGV-0131285_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0131285_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0131285_3	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0131285_3	UniRef90	UniRef90_UPI0011B6874E	phage tail tape measure protein	NA
UHGV-0131285_3	eggNOG-mapper	768486.EHR_09620	Phage-related minor tail protein	NA
UHGV-0131285_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0131285_3	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0131285_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0131285_3	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0131285_3	Structural annotation	PF10145, PF05384, TIGR01760, NF006545, COG5280	NA	NA
UHGV-0131285_4	PHROG	phrog_5802	NA	unknown function
UHGV-0131285_4	eggNOG-mapper	565664.EFXG_01769	NA	NA
UHGV-0131285_5	UniRef90	UniRef90_UPI0011B69742	phage tail protein	NA
UHGV-0131285_5	eggNOG-mapper	768486.EHR_09605	NA	NA
UHGV-0131285_5	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0131285_6	PHROG	phrog_5509	neck protein	connector
UHGV-0131285_6	UniRef90	UniRef90_I6SDV7	Gp9 protein	NA
UHGV-0131285_6	eggNOG-mapper	565664.EFXG_01771	NA	NA
UHGV-0131285_6	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0131285_7	PHROG	phrog_5910	NA	unknown function
UHGV-0131285_7	eggNOG-mapper	1139219.I569_00236	NA	NA
UHGV-0131285_8	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0131285_8	UniRef90	UniRef90_UPI0011B77E59	head-tail adaptor protein	NA
UHGV-0131285_8	eggNOG-mapper	1139219.I569_00235	NA	NA
UHGV-0131285_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0131285_9	PHROG	phrog_749	NA	unknown function
UHGV-0131285_9	UniRef90	UniRef90_I6S2A8	Gp6 protein	NA
UHGV-0131285_9	eggNOG-mapper	565664.EFXG_01774	NA	NA
UHGV-0131285_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0131285_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0131285_10	UniRef90	UniRef90_UPI0011B4A11B	phage major capsid protein	NA
UHGV-0131285_10	eggNOG-mapper	565664.EFXG_01776	Phage capsid family	NA
UHGV-0131285_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0131285_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0131285_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0131285_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0131285_11	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0131285_11	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0131285_11	UniRef90	UniRef90_UPI0011B736D3	Clp protease ClpP	NA
UHGV-0131285_11	eggNOG-mapper	235909.GK0530	Serine dehydrogenase proteinase	NA
UHGV-0131285_11	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0131285_11	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0131285_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-0131285_12	UniRef90	UniRef90_UPI0011B5ADC1	phage portal protein	NA
UHGV-0131285_12	eggNOG-mapper	565664.EFXG_01778	Phage portal protein	NA
UHGV-0131285_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0131285_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0131285_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0131285_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0131285_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0131285_13	UniRef90	UniRef90_UPI0011B72E30	terminase large subunit	NA
UHGV-0131285_13	eggNOG-mapper	565664.EFXG_01779	Phage Terminase	NA
UHGV-0131285_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0131285_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0131285_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0131285_13	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0131285_14	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0131285_14	UniRef90	UniRef90_A0A2N5Q1Z2	RNA polymerase subunit sigma-70	NA
UHGV-0131285_14	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0131285_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0131285_15	PHROG	phrog_5942	NA	unknown function
UHGV-0131285_15	eggNOG-mapper	565664.EFXG_01781	NA	NA
UHGV-0131285_16	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0131285_16	UniRef90	UniRef90_UPI001CDC907C	transcriptional regulator	NA
UHGV-0131285_16	eggNOG-mapper	1231336.L248_2136	NA	NA
UHGV-0131285_17	PHROG	phrog_5403	NA	unknown function
UHGV-0131285_17	UniRef90	UniRef90_UPI000F778AC3	DNA primase	NA
UHGV-0131285_17	eggNOG-mapper	1158604.I591_00515	NA	NA
UHGV-0131285_18	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0131285_18	UniRef90	UniRef90_UPI000F76E8D9	NA	NA
UHGV-0131285_18	eggNOG-mapper	1140002.I570_02895	NA	NA
UHGV-0131285_18	Pfam	PF06356	NA	DUF1064
UHGV-0131285_20	PHROG	phrog_121	NA	unknown function
UHGV-0131285_20	UniRef90	UniRef90_UPI000F79A308	NA	NA
UHGV-0131285_20	Pfam	PF07852	NA	DUF1642
UHGV-0131285_23	PHROG	phrog_30930	NA	unknown function
UHGV-0131285_23	UniRef90	UniRef90_D2BQD3	NA	NA
UHGV-0131285_23	eggNOG-mapper	1214184.ALKY01000039_gene933	NA	NA
UHGV-0131285_26	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0131285_26	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0131285_26	UniRef90	UniRef90_UPI000F7664BE	ATP-binding protein	NA
UHGV-0131285_26	eggNOG-mapper	543734.LCABL_05660	IstB-like ATP binding protein	NA
UHGV-0131285_26	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0131285_26	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0131285_26	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0131285_27	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0131285_27	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0131285_27	UniRef90	UniRef90_E2YZK7	DnaD domain protein	NA
UHGV-0131285_27	eggNOG-mapper	1140002.I570_02892	Replication initiation and membrane attachment	NA
UHGV-0131285_27	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0131285_27	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0131285_27	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0131285_27	Structural annotation	PF07261, PF09681, MF_01177, TIGR01446, TIGR01714, COG3935	NA	NA
UHGV-0131285_28	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0131285_28	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0131285_28	UniRef90	UniRef90_UPI000F7AD1E0	recombinase RecT	NA
UHGV-0131285_28	eggNOG-mapper	1423775.BAMN01000034_gene180	RecT family	NA
UHGV-0131285_28	Pfam	PF03837	RecT family	RecT
UHGV-0131285_28	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0131285_28	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0131285_28	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0131285_29	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0131285_29	UniRef90	UniRef90_UPI000F7760BF	YqaJ viral recombinase family protein	NA
UHGV-0131285_29	eggNOG-mapper	543734.LCABL_09660	YqaJ-like viral recombinase domain	NA
UHGV-0131285_29	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0131285_29	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0131285_29	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0131285_29	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0131285_31	PHROG	phrog_823	NA	unknown function
UHGV-0131285_31	UniRef90	UniRef90_UPI000F7AA823	NA	NA
UHGV-0131285_31	eggNOG-mapper	1071400.LBUCD034_1597	NA	NA
UHGV-0131285_31	Pfam	PF05595	NA	DUF771
UHGV-0131285_31	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-0131285_31	Structural annotation	PF05595, COG4707	NA	NA
UHGV-0131285_33	PHROG	phrog_4989	NA	unknown function
UHGV-0131285_33	eggNOG-mapper	1033733.CAEK01000007_gene1686	NA	NA
UHGV-0131285_34	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0131285_34	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0131285_34	UniRef90	UniRef90_UPI000F76F1DA	phage antirepressor	NA
UHGV-0131285_34	eggNOG-mapper	936140.AEOT01000014_gene1322	BRO family, N-terminal domain	NA
UHGV-0131285_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0131285_34	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0131285_34	COG	COG3617	Prophage antirepressor	NA
UHGV-0131285_34	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0131285_35	PHROG	phrog_3634	NA	unknown function
UHGV-0131285_35	UniRef90	UniRef90_A0A395YEE1	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0131285_35	eggNOG-mapper	1005704.HMPREF9968_1926	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0131285_35	PADLOC	Effector_00071	TIR	CBASS
UHGV-0131285_35	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0131285_35	Structural annotation	PF13676, MF_03036, TIGR03646, COG4916	NA	NA
UHGV-0131285_36	PHROG	phrog_30301	NA	unknown function
UHGV-0131285_37	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0131285_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0131285_37	UniRef90	UniRef90_UPI000F7B1336	helix-turn-helix domain-containing protein	NA
UHGV-0131285_37	eggNOG-mapper	701521.PECL_878	Helix-turn-helix XRE-family like proteins	NA
UHGV-0131285_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131285_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0131285_37	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0131285_38	PHROG	phrog_87	metallo-protease	other
UHGV-0131285_38	UniRef90	UniRef90_A0A0R2BJ08	Prophage lp1 protein 7	NA
UHGV-0131285_38	eggNOG-mapper	220668.lp_2449	IrrE N-terminal-like domain	NA
UHGV-0131285_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0131285_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0131285_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0131285_39	UniRef90	UniRef90_C9AQ07	Predicted protein	NA
UHGV-0131285_39	eggNOG-mapper	1300150.EMQU_0755	NA	NA
UHGV-0131285_41	KOfam	K14059	int; integrase	NA
UHGV-0131285_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0131285_41	UniRef90	UniRef90_A0A0R2BNN5	Phage integrase	NA
UHGV-0131285_41	eggNOG-mapper	1423807.BACO01000050_gene1472	Belongs to the 'phage' integrase family	NA
UHGV-0131285_41	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0131285_41	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0131285_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0131285_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0131285_41	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA