UHGV-0131310

Genome information

Genome length 42,992 bps

CDS count 63

Completeness 88.89% (medium-quality)

geNomad score 0.9614

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131310
vOTU ID	vOTU-018535
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370221
BioSample	SAMN03281018
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9614
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.96
Jumbo phage	No

Genome content
Genome length	42,992 bps
GC content	35.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	83.60%
Average CDS length	574.86 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131310_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0131310_1	PHROG	phrog_291	endolysin	lysis
UHGV-0131310_1	UniRef90	UniRef90_A0A366KFI4	Glycoside hydrolase family 25	NA
UHGV-0131310_1	eggNOG-mapper	349123.Lreu23DRAFT_4193	lysozyme activity	NA
UHGV-0131310_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0131310_1	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0131310_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0131310_1	Structural annotation	PF01183, PF08460, MF_00496, NF033202, NF009621, COG3757	NA	NA
UHGV-0131310_2	PHROG	phrog_19508	holin	lysis
UHGV-0131310_2	UniRef90	UniRef90_UPI0015F11A8F	phiAdh family holin	NA
UHGV-0131310_4	PHROG	phrog_4325	holin	lysis
UHGV-0131310_4	eggNOG-mapper	97137.C821_00023	NA	NA
UHGV-0131310_4	Structural annotation	PF14248, COG2259	NA	NA
UHGV-0131310_5	PHROG	phrog_134	NA	unknown function
UHGV-0131310_5	UniRef90	UniRef90_A0A366KHA0	XkdX family protein	NA
UHGV-0131310_5	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0131310_6	PHROG	phrog_16648	NA	unknown function
UHGV-0131310_7	PHROG	phrog_26580	NA	unknown function
UHGV-0131310_7	UniRef90	UniRef90_UPI001E611E98	BppU family phage baseplate upper protein	NA
UHGV-0131310_7	eggNOG-mapper	139871.Q9AZ87_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0131310_7	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0131310_7	Pfam	PF08598	Sds3-like	Sds3
UHGV-0131310_9	PHROG	phrog_12493	tail protein	tail
UHGV-0131310_9	UniRef90	UniRef90_I7L5V7	Prophage_tail domain-containing protein	NA
UHGV-0131310_9	eggNOG-mapper	1423758.BN55_09560	Phage minor structural protein	NA
UHGV-0131310_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0131310_9	COG	COG4926	Phage-related protein	NA
UHGV-0131310_9	Structural annotation	PF14594, PF19087, TIGR01665, NF038016, COG4926	NA	NA
UHGV-0131310_10	UniRef90	UniRef90_I7JUR9	Putative prophage pi2 protein 43	NA
UHGV-0131310_10	eggNOG-mapper	1423758.BN55_09555	Phage tail protein	NA
UHGV-0131310_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0131310_10	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0131310_11	KOfam	K10866	RAD50; DNA repair protein RAD50 [EC:3.6.-.-]	NA
UHGV-0131310_11	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0131310_11	UniRef90	UniRef90_A0A366KGR7	Phage tail tape measure protein	NA
UHGV-0131310_11	eggNOG-mapper	1423758.BN55_09550	Phage tail tape measure protein TP901	NA
UHGV-0131310_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0131310_11	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0131310_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0131310_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0131310_12	PHROG	phrog_26915	NA	unknown function
UHGV-0131310_12	eggNOG-mapper	349123.Lreu23DRAFT_3166	NA	NA
UHGV-0131310_12	Structural annotation	PF06896	NA	NA
UHGV-0131310_13	PHROG	phrog_88	major tail protein	tail
UHGV-0131310_13	UniRef90	UniRef90_A0A366KH42	Phage tail protein	NA
UHGV-0131310_13	eggNOG-mapper	1423758.BN55_09530	Phage tail tube protein	NA
UHGV-0131310_13	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0131310_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0131310_14	PHROG	phrog_1217	tail protein	tail
UHGV-0131310_14	UniRef90	UniRef90_UPI000C798994	NA	NA
UHGV-0131310_14	eggNOG-mapper	1423758.BN55_09525	NA	NA
UHGV-0131310_14	Structural annotation	PF05657	NA	NA
UHGV-0131310_15	UniRef90	UniRef90_I7L9S2	Phage head-tail joining protein	NA
UHGV-0131310_15	eggNOG-mapper	1423758.BN55_09520	NA	NA
UHGV-0131310_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-0131310_16	UniRef90	UniRef90_A0A267M6H1	Head-tail adaptor protein	NA
UHGV-0131310_16	eggNOG-mapper	349123.Lreu23DRAFT_3162	Phage head-tail joining protein	NA
UHGV-0131310_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0131310_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0131310_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0131310_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0131310_17	UniRef90	UniRef90_A0A366KGE2	DNA-packaging protein	NA
UHGV-0131310_17	eggNOG-mapper	1423758.BN55_09510	Phage gp6-like head-tail connector protein	NA
UHGV-0131310_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0131310_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0131310_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0131310_18	UniRef90	UniRef90_A0A366KI29	Phage major capsid protein	NA
UHGV-0131310_18	eggNOG-mapper	349123.Lreu23DRAFT_3159	Phage capsid family	NA
UHGV-0131310_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0131310_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0131310_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0131310_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0131310_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0131310_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0131310_19	UniRef90	UniRef90_A0A366KI39	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0131310_19	eggNOG-mapper	349123.Lreu23DRAFT_3158	Belongs to the peptidase S14 family	NA
UHGV-0131310_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0131310_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0131310_19	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0131310_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0131310_20	UniRef90	UniRef90_A0A366KHJ7	Phage portal protein	NA
UHGV-0131310_20	eggNOG-mapper	1423758.BN55_09495	portal protein	NA
UHGV-0131310_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0131310_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0131310_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0131310_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0131310_22	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0131310_22	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0131310_22	UniRef90	UniRef90_A0A366KGB9	Methyltransferase	NA
UHGV-0131310_22	eggNOG-mapper	1423758.BN55_09485	DNA methylase	NA
UHGV-0131310_22	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0131310_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0131310_22	COG	COG0863	DNA modification methylase	NA
UHGV-0131310_22	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0131310_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0131310_23	UniRef90	UniRef90_A0A366KGQ7	Terminase large subunit	NA
UHGV-0131310_23	eggNOG-mapper	349123.Lreu23DRAFT_3156	Terminase	NA
UHGV-0131310_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0131310_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0131310_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0131310_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0131310_24	PHROG	phrog_10517	terminase large subunit	head and packaging
UHGV-0131310_24	UniRef90	UniRef90_A0A366KHT3	Terminase	NA
UHGV-0131310_24	eggNOG-mapper	349123.Lreu23DRAFT_3154	Terminase	NA
UHGV-0131310_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0131310_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0131310_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0131310_25	UniRef90	UniRef90_A0A366KH31	Phage terminase small subunit P27 family	NA
UHGV-0131310_25	eggNOG-mapper	1423758.BN55_09475	Phage terminase, small subunit	NA
UHGV-0131310_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0131310_25	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0131310_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0131310_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0131310_27	PHROG	phrog_2277	NA	unknown function
UHGV-0131310_27	eggNOG-mapper	1122146.AUHP01000011_gene254	NA	NA
UHGV-0131310_29	PHROG	phrog_2277	NA	unknown function
UHGV-0131310_29	eggNOG-mapper	1122152.AUEI01000003_gene1133	NA	NA
UHGV-0131310_40	UniRef90	UniRef90_UPI0018977FB6	IS3 family transposase	NA
UHGV-0131310_40	eggNOG-mapper	891391.LAC30SC_02360	COG2963 Transposase and inactivated derivatives	NA
UHGV-0131310_40	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0131310_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0131310_43	UniRef90	UniRef90_A0A366KJ33	Transcriptional regulator	NA
UHGV-0131310_43	eggNOG-mapper	1423758.BN55_09365	Transcriptional regulator, RinA family	NA
UHGV-0131310_43	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0131310_43	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0131310_47	PHROG	phrog_11108	NA	unknown function
UHGV-0131310_47	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0131310_47	Structural annotation	PF13384, NF040595	NA	NA
UHGV-0131310_52	PHROG	phrog_26938	NA	unknown function
UHGV-0131310_52	UniRef90	UniRef90_A0A8A8L799	Sporulation protein Cse60	NA
UHGV-0131310_52	Pfam	PF10957	Sporulation protein Cse60	Spore_Cse60
UHGV-0131310_57	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0131310_57	UniRef90	UniRef90_A0A366KGN9	NA	NA
UHGV-0131310_57	eggNOG-mapper	39103.U5U430_9CAUD	NA	NA
UHGV-0131310_57	Pfam	PF12961	NA	DUF3850
UHGV-0131310_57	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0131310_58	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0131310_58	UniRef90	UniRef90_A0A366KHR2	SAM-dependent methyltransferase	NA
UHGV-0131310_58	eggNOG-mapper	1423814.HMPREF0549_0160	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0131310_58	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0131310_58	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0131310_58	Structural annotation	PF01555, NF008242	NA	NA
UHGV-0131310_59	PHROG	phrog_7811	methyltransferase	other
UHGV-0131310_59	UniRef90	UniRef90_A0A4L7JVY7	Methyltransferase	NA
UHGV-0131310_59	eggNOG-mapper	1423814.HMPREF0549_0160	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0131310_59	PADLOC	oMTase_00019	orphan methyltransferase	RM
UHGV-0131310_59	COG	COG0500	SAM-dependent methyltransferase	NA