UHGV-0131366

Genome information

Genome length 45,033 bps

CDS count 72

Completeness 99.94% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131366
vOTU ID	vOTU-009799
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_369388
BioSample	SAMN03283271
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.2
Jumbo phage	No

Genome content
Genome length	45,033 bps
GC content	40.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	87.92%
Average CDS length	553.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131366_2	UniRef90	UniRef90_A0A3A9J7F4	XRE family transcriptional regulator	NA
UHGV-0131366_5	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0131366_5	UniRef90	UniRef90_A0A1C5KR15	AP2 domain	NA
UHGV-0131366_5	eggNOG-mapper	742740.HMPREF9474_00071	NA	NA
UHGV-0131366_6	UniRef90	UniRef90_A0A416SH94	Helix-turn-helix domain-containing protein	NA
UHGV-0131366_6	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0131366_6	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0131366_6	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0131366_7	PHROG	phrog_10714	NA	unknown function
UHGV-0131366_7	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0131366_8	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-0131366_9	Structural annotation	PF17400	NA	NA
UHGV-0131366_12	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0131366_14	PHROG	phrog_15198	NA	unknown function
UHGV-0131366_14	UniRef90	UniRef90_UPI001C00FD03	NA	NA
UHGV-0131366_14	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0131366_14	Pfam	PF04448	NA	DUF551
UHGV-0131366_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0131366_17	UniRef90	UniRef90_A0A373DE70	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0131366_17	eggNOG-mapper	742733.HMPREF9469_01838	sulfate reduction	NA
UHGV-0131366_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0131366_17	Structural annotation	PF01507, MF_00063, TIGR02055, COG0175	NA	NA
UHGV-0131366_18	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0131366_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0131366_18	UniRef90	UniRef90_UPI0018A95D39	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0131366_18	eggNOG-mapper	742765.HMPREF9457_03403	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0131366_18	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0131366_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0131366_18	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0131366_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0131366_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0131366_21	UniRef90	UniRef90_UPI000E4B7CD2	ATP-binding protein	NA
UHGV-0131366_21	eggNOG-mapper	397291.C804_01604	Bacterial dnaA protein	NA
UHGV-0131366_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0131366_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0131366_21	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0131366_22	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0131366_22	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0131366_22	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-0131366_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0131366_22	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0131366_23	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0131366_23	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0131366_23	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0131366_24	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0131366_24	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0131366_25	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0131366_25	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0131366_25	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0131366_26	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0131366_26	UniRef90	UniRef90_UPI000E49F6EC	NA	NA
UHGV-0131366_26	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0131366_26	Pfam	PF06378	NA	DUF1071
UHGV-0131366_26	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0131366_30	PHROG	phrog_6058	NA	unknown function
UHGV-0131366_30	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0131366_30	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0131366_31	PHROG	phrog_7964	NA	unknown function
UHGV-0131366_31	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0131366_31	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0131366_31	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0131366_31	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0131366_33	UniRef90	UniRef90_A0A396QAC5	NA	NA
UHGV-0131366_33	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0131366_33	Pfam	PF05339	NA	DUF739
UHGV-0131366_33	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0131366_33	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0131366_34	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0131366_34	UniRef90	UniRef90_UPI001D029144	transcriptional regulator	NA
UHGV-0131366_34	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-0131366_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0131366_34	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0131366_36	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0131366_36	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0131366_36	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0131366_36	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0131366_36	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0131366_37	KOfam	K14059	int; integrase	NA
UHGV-0131366_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0131366_37	UniRef90	UniRef90_A0A6L8SXX0	Tyrosine-type recombinase/integrase	NA
UHGV-0131366_37	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0131366_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0131366_37	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0131366_38	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0131366_38	PHROG	phrog_2577	transposase	integration and excision
UHGV-0131366_38	UniRef90	UniRef90_A0A3C1J0Z9	IS200/IS605 family transposase	NA
UHGV-0131366_38	eggNOG-mapper	411459.RUMOBE_02192	Transposase IS200 like	NA
UHGV-0131366_38	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0131366_38	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0131366_38	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0131366_38	Structural annotation	PF01797, MF_00360, NF033573, COG1943	NA	NA
UHGV-0131366_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0131366_39	PHROG	phrog_6745	endolysin	lysis
UHGV-0131366_39	UniRef90	UniRef90_UPI0018972B9E	peptidoglycan-binding protein	NA
UHGV-0131366_39	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0131366_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0131366_39	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0131366_39	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0131366_39	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0131366_39	Structural annotation	PF01183, PF05382, NF003627, TIGR02219, COG3757	NA	NA
UHGV-0131366_40	PHROG	phrog_6616	tail protein	tail
UHGV-0131366_40	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0131366_40	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0131366_40	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0131366_40	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0131366_41	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0131366_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0131366_42	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0131366_42	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0131366_42	COG	COG1511	NA	NA
UHGV-0131366_42	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0131366_43	PHROG	phrog_706	NA	unknown function
UHGV-0131366_43	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0131366_43	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0131366_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0131366_43	Structural annotation	PF06854	NA	NA
UHGV-0131366_44	PHROG	phrog_11299	NA	unknown function
UHGV-0131366_44	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0131366_44	Structural annotation	PF10666	NA	NA
UHGV-0131366_45	PHROG	phrog_3099	NA	unknown function
UHGV-0131366_45	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0131366_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0131366_46	PHROG	phrog_3266	tail completion	connector
UHGV-0131366_46	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0131366_46	Structural annotation	PF12691	NA	NA
UHGV-0131366_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0131366_47	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0131366_47	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0131366_47	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0131366_47	Structural annotation	PF11114	NA	NA
UHGV-0131366_48	PHROG	phrog_3366	NA	unknown function
UHGV-0131366_48	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0131366_48	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0131366_49	PHROG	phrog_1129	holin	lysis
UHGV-0131366_49	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0131366_49	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0131366_49	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0131366_49	Structural annotation	PF06946	NA	NA
UHGV-0131366_51	PHROG	phrog_1233	NA	unknown function
UHGV-0131366_51	eggNOG-mapper	476272.RUMHYD_01960	NA	NA
UHGV-0131366_52	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0131366_52	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0131366_54	PHROG	phrog_544	major head protein	head and packaging
UHGV-0131366_54	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0131366_54	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0131366_54	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0131366_54	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0131366_55	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0131366_55	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0131366_55	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0131366_55	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0131366_56	PHROG	phrog_28802	NA	unknown function
UHGV-0131366_56	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0131366_57	PHROG	phrog_20016	NA	unknown function
UHGV-0131366_57	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0131366_57	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0131366_57	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0131366_58	PHROG	phrog_16490	NA	unknown function
UHGV-0131366_58	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0131366_59	PHROG	phrog_22984	NA	unknown function
UHGV-0131366_60	PHROG	phrog_21718	NA	unknown function
UHGV-0131366_60	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0131366_61	PHROG	phrog_31631	NA	unknown function
UHGV-0131366_62	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0131366_62	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0131366_63	PHROG	phrog_3754	NA	unknown function
UHGV-0131366_63	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0131366_64	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0131366_64	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0131366_64	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0131366_64	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0131366_64	COG	COG2369	NA	NA
UHGV-0131366_64	Structural annotation	PF06152	NA	NA
UHGV-0131366_65	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0131366_65	PHROG	phrog_30034	NA	unknown function
UHGV-0131366_65	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0131366_65	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0131366_65	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0131366_65	Structural annotation	PF14600	NA	NA
UHGV-0131366_69	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0131366_69	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0131366_70	PHROG	phrog_533	portal protein	head and packaging
UHGV-0131366_70	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0131366_70	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0131366_70	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0131366_72	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0131366_72	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0131366_72	UniRef90	UniRef90_A0A412EKJ9	PBSX family phage terminase large subunit	NA
UHGV-0131366_72	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0131366_72	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0131366_72	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0131366_72	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0131366_72	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0131366_72	COG	COG1783	Phage terminase large subunit	NA
UHGV-0131366_72	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA