UHGV-0131368

Genome information

Genome length 29,980 bps

CDS count 42

Completeness 55.06% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131368
vOTU ID	vOTU-024670
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_369391
BioSample	SAMN03283271
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.23
Jumbo phage	No

Genome content
Genome length	29,980 bps
GC content	53.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.66%
Average CDS length	657.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131368_1	UniRef90	UniRef90_A0A173R7Y0	Six-cysteine peptide SCIFF	NA
UHGV-0131368_1	eggNOG-mapper	657322.FPR_28300	RSAM-modified six-cysteine peptide	NA
UHGV-0131368_1	Pfam	PF13165	Six-cysteine peptide SCIFF	SCIFF
UHGV-0131368_1	NCBIFam	TIGR03973.1	six-cysteine ranthipeptide SCIFF	NA
UHGV-0131368_2	UniRef90	UniRef90_A0A2A6ZNH3	NA	NA
UHGV-0131368_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0131368_4	UniRef90	UniRef90_A0A2A6ZH04	XRE family transcriptional regulator	NA
UHGV-0131368_4	eggNOG-mapper	97139.C824_01421	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0131368_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0131368_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0131368_4	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0131368_5	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0131368_5	UniRef90	UniRef90_A0A2A7AFF5	Transcriptional regulator	NA
UHGV-0131368_5	eggNOG-mapper	1235802.C823_05610	helix-turn-helix	NA
UHGV-0131368_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0131368_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0131368_6	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0131368_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0131368_6	UniRef90	UniRef90_A0A2A7AES6	Transcriptional regulator	NA
UHGV-0131368_6	eggNOG-mapper	1117108.PAALTS15_13457	Transcriptional regulator	NA
UHGV-0131368_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0131368_6	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0131368_6	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0131368_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0131368_7	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0131368_7	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0131368_7	COG	COG5412	Phage-related protein	NA
UHGV-0131368_8	PHROG	phrog_3366	NA	unknown function
UHGV-0131368_8	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0131368_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0131368_9	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0131368_11	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0131368_11	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0131368_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0131368_12	UniRef90	UniRef90_A0A1H7MPG5	Phage minor structural protein GP20	NA
UHGV-0131368_12	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-0131368_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0131368_12	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0131368_15	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0131368_15	UniRef90	UniRef90_A0A3E2XB99	NA	NA
UHGV-0131368_15	eggNOG-mapper	748224.HMPREF9436_01411	NA	NA
UHGV-0131368_15	Pfam	PF14359	NA	DUF4406
UHGV-0131368_15	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0131368_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0131368_18	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0131368_18	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0131368_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0131368_18	COG	COG2369	NA	NA
UHGV-0131368_18	Structural annotation	PF06152	NA	NA
UHGV-0131368_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0131368_19	UniRef90	UniRef90_A0A1H7MQM5	Phage portal protein, putative, A118 family	NA
UHGV-0131368_19	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0131368_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0131368_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0131368_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0131368_20	UniRef90	UniRef90_A0A373MY72	PBSX family phage terminase large subunit	NA
UHGV-0131368_20	eggNOG-mapper	1120746.CCNL01000014_gene2093	DNA packaging	NA
UHGV-0131368_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0131368_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0131368_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0131368_20	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0131368_21	PHROG	phrog_2412	NA	unknown function
UHGV-0131368_21	UniRef90	UniRef90_A0A150NN47	NA	NA
UHGV-0131368_21	eggNOG-mapper	12402.Q708N5_9CAUD	NA	NA
UHGV-0131368_22	PHROG	phrog_918	NA	unknown function
UHGV-0131368_22	UniRef90	UniRef90_UPI001B8C9B95	NA	NA
UHGV-0131368_22	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0131368_22	Pfam	PF19791	NA	DUF6275
UHGV-0131368_22	Structural annotation	PF19791	NA	NA
UHGV-0131368_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0131368_23	PHROG	phrog_2159	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0131368_23	UniRef90	UniRef90_D4K2P2	Predicted transcriptional regulators	NA
UHGV-0131368_23	eggNOG-mapper	718252.FP2_00770	ParB-like nuclease domain	NA
UHGV-0131368_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0131368_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0131368_23	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0131368_24	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0131368_24	UniRef90	UniRef90_A0A2A7AF71	PAPS_reduct domain-containing protein	NA
UHGV-0131368_24	eggNOG-mapper	718252.FP2_00780	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0131368_24	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0131368_24	COG	COG3969	NA	NA
UHGV-0131368_24	Structural annotation	PF01507, MF_00063, NF006327, COG3969	NA	NA
UHGV-0131368_25	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0131368_25	UniRef90	UniRef90_A0A3A6EE00	ParB domain-containing protein	NA
UHGV-0131368_25	eggNOG-mapper	718252.FP2_00800	DNA binding	NA
UHGV-0131368_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0131368_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0131368_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0131368_25	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0131368_26	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0131368_26	UniRef90	UniRef90_A0A3A9I8I3	PAPS_reduct domain-containing protein	NA
UHGV-0131368_26	eggNOG-mapper	1408437.JNJN01000030_gene1072	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0131368_26	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0131368_26	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0131368_27	eggNOG-mapper	718252.FP2_00810	NA	NA
UHGV-0131368_27	Structural annotation	PF00474, MF_01426, TIGR00912, COG0591	NA	NA
UHGV-0131368_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0131368_28	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-0131368_28	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0131368_28	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0131368_30	PHROG	phrog_3136	NA	unknown function
UHGV-0131368_30	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0131368_30	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0131368_30	Pfam	PF04266	ASCH domain	ASCH
UHGV-0131368_30	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0131368_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0131368_34	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0131368_34	UniRef90	UniRef90_A0A1Q6PTU8	ParB domain-containing protein	NA
UHGV-0131368_34	eggNOG-mapper	718252.FP2_00920	ParB-like nuclease domain	NA
UHGV-0131368_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0131368_34	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0131368_34	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0131368_34	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0131368_35	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0131368_35	PHROG	phrog_5696	NA	unknown function
UHGV-0131368_35	UniRef90	UniRef90_A0A1Q6PTX9	N6_Mtase domain-containing protein	NA
UHGV-0131368_35	eggNOG-mapper	718252.FP2_00930	N-6 DNA Methylase	NA
UHGV-0131368_35	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0131368_35	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0131368_35	Structural annotation	PF05185, TIGR00497, COG0286	NA	NA
UHGV-0131368_36	PHROG	phrog_36563	NA	unknown function
UHGV-0131368_36	UniRef90	UniRef90_A0A3D1WJW6	Ftsk_gamma domain-containing protein	NA
UHGV-0131368_36	eggNOG-mapper	718252.FP2_00940	NA	NA
UHGV-0131368_37	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0131368_37	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0131368_37	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0131368_38	PHROG	phrog_7566	NA	unknown function
UHGV-0131368_38	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0131368_39	Structural annotation	PF11417	NA	NA
UHGV-0131368_40	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0131368_40	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0131368_40	UniRef90	UniRef90_D4K2R2	DnaD and phage-associated domain	NA
UHGV-0131368_40	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0131368_40	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0131368_40	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0131368_40	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0131368_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0131368_40	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA