UHGV-0131399

Genome information

Genome length 33,655 bps

CDS count 50

Completeness 97.40% (high-quality)

geNomad score 0.9432

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131399
vOTU ID	vOTU-009298
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_388729
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9432
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.55
Jumbo phage	No

Genome content
Genome length	33,655 bps
GC content	30.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	87.28%
Average CDS length	590.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131399_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0131399_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0131399_2	UniRef90	UniRef90_UPI001D0627D7	helix-turn-helix transcriptional regulator	NA
UHGV-0131399_2	eggNOG-mapper	1120985.AUMI01000019_gene2260	sequence-specific DNA binding	NA
UHGV-0131399_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131399_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0131399_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0131399_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0131399_3	UniRef90	UniRef90_UPI001662B322	helix-turn-helix domain-containing protein	NA
UHGV-0131399_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131399_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0131399_4	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0131399_4	UniRef90	UniRef90_UPI001CD727A8	helix-turn-helix transcriptional regulator	NA
UHGV-0131399_4	eggNOG-mapper	632518.Calow_0810	Helix-turn-helix XRE-family like proteins	NA
UHGV-0131399_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131399_4	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0131399_4	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0131399_9	UniRef90	UniRef90_UPI001CD4C4F1	helix-turn-helix domain-containing protein	NA
UHGV-0131399_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0131399_9	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0131399_11	UniRef90	UniRef90_UPI001CD392E3	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0131399_11	Pfam	PF01476	LysM domain	LysM
UHGV-0131399_11	COG	COG1388	LysM repeat	NA
UHGV-0131399_11	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0131399_12	eggNOG-mapper	1304866.K413DRAFT_2961	NA	NA
UHGV-0131399_12	Structural annotation	PF13463, MF_01819, NF008565, COG1846	NA	NA
UHGV-0131399_13	KOfam	K22222	cetZ; tubulin-like protein CetZ	NA
UHGV-0131399_13	PHROG	phrog_17961	NA	unknown function
UHGV-0131399_13	UniRef90	UniRef90_A0A7X5I836	Tubulin domain-containing protein	NA
UHGV-0131399_13	eggNOG-mapper	1235793.C809_02636	PFAM Tubulin FtsZ	NA
UHGV-0131399_13	Pfam	PF00091	Tubulin/FtsZ family, GTPase domain	Tubulin
UHGV-0131399_13	COG	COG0206	Cell division GTPase FtsZ	NA
UHGV-0131399_13	Structural annotation	PF00091, PF21011, MF_01946, TIGR00065, COG0206	NA	NA
UHGV-0131399_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0131399_14	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-0131399_14	Structural annotation	PF11726	NA	NA
UHGV-0131399_15	KOfam	K03700	recU; recombination protein U	NA
UHGV-0131399_15	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0131399_15	UniRef90	UniRef90_UPI001CD3D53F	Holliday junction resolvase RecU	NA
UHGV-0131399_15	eggNOG-mapper	1151292.QEW_0324	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0131399_15	Pfam	PF03838	Recombination protein U	RecU
UHGV-0131399_15	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0131399_15	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0131399_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0131399_17	UniRef90	UniRef90_A0A412CHD7	NA	NA
UHGV-0131399_17	eggNOG-mapper	927704.SELR_11170	DNA-templated transcription, initiation	NA
UHGV-0131399_17	Pfam	PF07374	NA	DUF1492
UHGV-0131399_17	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0131399_17	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-0131399_19	PHROG	phrog_19381	NA	unknown function
UHGV-0131399_19	eggNOG-mapper	1122216.AUHW01000030_gene1701	NA	NA
UHGV-0131399_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0131399_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0131399_20	UniRef90	UniRef90_A0A412CHN3	HNH endonuclease	NA
UHGV-0131399_20	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-0131399_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0131399_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0131399_21	PHROG	phrog_1066	NA	unknown function
UHGV-0131399_21	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0131399_21	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0131399_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0131399_22	UniRef90	UniRef90_Q637A5	Terminase large subunit, N-terminal region	NA
UHGV-0131399_22	eggNOG-mapper	1444310.JANV01000004_gene2684	Terminase	NA
UHGV-0131399_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0131399_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0131399_22	Structural annotation	PF03354, NF003298, COG4626	NA	NA
UHGV-0131399_23	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-0131399_23	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-0131399_23	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-0131399_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0131399_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0131399_23	Structural annotation	PF20441, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0131399_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0131399_24	UniRef90	UniRef90_UPI00142FCB51	phage portal protein	NA
UHGV-0131399_24	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0131399_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0131399_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0131399_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0131399_25	KOfam	K06904	NA	NA
UHGV-0131399_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0131399_25	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-0131399_25	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-0131399_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0131399_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0131399_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0131399_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0131399_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0131399_26	UniRef90	UniRef90_A0A412CI12	Phage major capsid protein	NA
UHGV-0131399_26	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0131399_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0131399_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0131399_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0131399_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0131399_27	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0131399_27	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0131399_27	UniRef90	UniRef90_A0A412CHG4	Collagen-like protein	NA
UHGV-0131399_27	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0131399_28	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0131399_28	UniRef90	UniRef90_A0A412CHC9	Phage gp6-like head-tail connector protein	NA
UHGV-0131399_28	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-0131399_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0131399_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0131399_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0131399_29	PHROG	phrog_25	head closure Hc1	connector
UHGV-0131399_29	UniRef90	UniRef90_UPI001CD5F5A7	phage head closure protein	NA
UHGV-0131399_29	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0131399_29	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0131399_29	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0131399_29	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0131399_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0131399_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0131399_30	UniRef90	UniRef90_A0A412CI38	HK97 gp10 family phage protein	NA
UHGV-0131399_30	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0131399_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0131399_30	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0131399_31	PHROG	phrog_525	NA	unknown function
UHGV-0131399_31	Pfam	PF20765	NA	DUF6838
UHGV-0131399_31	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0131399_32	PHROG	phrog_1480	tail sheath	tail
UHGV-0131399_32	UniRef90	UniRef90_A0A412CH32	Phage tail sheath protein	NA
UHGV-0131399_32	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0131399_32	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0131399_32	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0131399_32	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0131399_33	PHROG	phrog_365	tail protein	tail
UHGV-0131399_33	UniRef90	UniRef90_A0A412CHD4	Phage portal protein	NA
UHGV-0131399_33	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0131399_33	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0131399_33	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0131399_34	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0131399_34	UniRef90	UniRef90_A0A7Y2PM55	XkdN-like protein	NA
UHGV-0131399_34	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0131399_34	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0131399_34	Structural annotation	PF08890	NA	NA
UHGV-0131399_35	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0131399_35	UniRef90	UniRef90_UPI001CD3E521	phage tail tape measure protein	NA
UHGV-0131399_35	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0131399_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0131399_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0131399_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0131399_35	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0131399_36	PHROG	phrog_5184	NA	unknown function
UHGV-0131399_36	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0131399_36	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0131399_36	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0131399_36	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0131399_36	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0131399_37	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0131399_37	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0131399_38	PHROG	phrog_400	tail protein	tail
UHGV-0131399_38	UniRef90	UniRef90_I0GWS1	Phage related protein	NA
UHGV-0131399_38	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0131399_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0131399_39	PHROG	phrog_579	NA	unknown function
UHGV-0131399_39	UniRef90	UniRef90_A0A412CHC2	NA	NA
UHGV-0131399_39	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-0131399_39	Pfam	PF10844	NA	DUF2577
UHGV-0131399_39	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0131399_40	PHROG	phrog_120	baseplate protein	tail
UHGV-0131399_40	UniRef90	UniRef90_A0A412CHX1	NA	NA
UHGV-0131399_40	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0131399_40	Pfam	PF10934	NA	DUF2634
UHGV-0131399_40	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0131399_40	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0131399_41	PHROG	phrog_6	baseplate protein	tail
UHGV-0131399_41	UniRef90	UniRef90_A0A412CI32	Baseplate_J domain-containing protein	NA
UHGV-0131399_41	eggNOG-mapper	1232428.CAVO010000003_gene996	Baseplate J-like protein	NA
UHGV-0131399_41	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0131399_41	COG	COG3299	NA	NA
UHGV-0131399_41	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0131399_42	PHROG	phrog_521	tail protein	tail
UHGV-0131399_42	UniRef90	UniRef90_A0A412CHL4	NA	NA
UHGV-0131399_42	eggNOG-mapper	1273103.NM10_00994	NA	NA
UHGV-0131399_42	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0131399_42	COG	COG3778	NA	NA
UHGV-0131399_42	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0131399_43	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0131399_43	UniRef90	UniRef90_UPI001CD684CA	phage tail protein	NA
UHGV-0131399_43	eggNOG-mapper	546273.VEIDISOL_00731	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0131399_43	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0131399_43	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0131399_43	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0131399_44	PHROG	phrog_6465	tail protein	tail
UHGV-0131399_44	UniRef90	UniRef90_UPI000E53CCA6	VCBS domain-containing protein	NA
UHGV-0131399_44	eggNOG-mapper	411490.ANACAC_00723	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0131399_44	COG	COG4675	Phage tail collar domain	NA
UHGV-0131399_45	PHROG	phrog_5717	tail protein	tail
UHGV-0131399_45	UniRef90	UniRef90_UPI000E53CCA6	VCBS domain-containing protein	NA
UHGV-0131399_45	eggNOG-mapper	445971.ANASTE_00089	NA	NA
UHGV-0131399_45	COG	COG4675	Phage tail collar domain	NA
UHGV-0131399_46	KOfam	K14059	int; integrase	NA
UHGV-0131399_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0131399_46	UniRef90	UniRef90_UPI00195D001E	site-specific integrase	NA
UHGV-0131399_46	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0131399_46	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0131399_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0131399_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0131399_46	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0131399_47	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-0131399_49	PHROG	phrog_199	holin	lysis
UHGV-0131399_49	UniRef90	UniRef90_A0A378NSW3	Phage-related holin (Lysis protein)	NA
UHGV-0131399_49	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-0131399_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0131399_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0131399_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0131399_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0131399_50	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0131399_50	PHROG	phrog_822	amidase	lysis
UHGV-0131399_50	UniRef90	UniRef90_UPI0018C4EA8D	peptidoglycan recognition protein family protein	NA
UHGV-0131399_50	eggNOG-mapper	864563.HMPREF9166_0546	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0131399_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0131399_50	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0131399_50	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA