UHGV-0131472

Genome information

vOTU vOTU-020469

Genome length 30,780 bps

CDS count 50

Completeness 79.81% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131472
vOTU ID	vOTU-020469
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_392961
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.97
Jumbo phage	No

Genome content
Genome length	30,780 bps
GC content	51.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.09%
Average CDS length	569.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131472_1	KOfam	K14059	int; integrase	NA
UHGV-0131472_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0131472_1	UniRef90	UniRef90_S5MR65	Integrase	NA
UHGV-0131472_1	eggNOG-mapper	1197719.A464_2051	NA	NA
UHGV-0131472_1	Pfam	PF12167	Arm DNA-binding domain	Arm-DNA-bind_2
UHGV-0131472_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0131472_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0131472_1	Structural annotation	PF00589, PF12167, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0131472_2	PHROG	phrog_539	excisionase	integration and excision
UHGV-0131472_2	UniRef90	UniRef90_A0A0F1B0P0	Excisionase	NA
UHGV-0131472_2	eggNOG-mapper	716541.ECL_02720	NA	NA
UHGV-0131472_2	Pfam	PF06806	NA	DUF1233
UHGV-0131472_2	Structural annotation	PF06806	NA	NA
UHGV-0131472_3	PHROG	phrog_24826	NA	unknown function
UHGV-0131472_3	eggNOG-mapper	1224318.DT73_00400	NA	NA
UHGV-0131472_3	Structural annotation	PF17345	NA	NA
UHGV-0131472_4	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0131472_4	UniRef90	UniRef90_A0A0F6TV00	ORF6N domain-containing protein	NA
UHGV-0131472_4	eggNOG-mapper	1197719.A464_2045	ORF6N domain	NA
UHGV-0131472_4	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0131472_4	Structural annotation	PF10543, TIGR02681, COG3561	NA	NA
UHGV-0131472_5	KOfam	K04087	hflC; modulator of FtsH protease HflC	NA
UHGV-0131472_5	PHROG	phrog_200	lipoprotein	other
UHGV-0131472_5	UniRef90	UniRef90_A0A2U0LHW6	Gp20	NA
UHGV-0131472_5	eggNOG-mapper	103807.Q8W654_9CAUD	SPFH domain / Band 7 family	NA
UHGV-0131472_5	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0131472_5	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0131472_6	PHROG	phrog_1130	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0131472_6	UniRef90	UniRef90_A0A3T7Z3M5	Glycosyltransferase family 4 protein	NA
UHGV-0131472_7	PHROG	phrog_1886	NA	unknown function
UHGV-0131472_7	eggNOG-mapper	716541.ECL_02716	NA	NA
UHGV-0131472_8	PHROG	phrog_1737	NA	unknown function
UHGV-0131472_8	eggNOG-mapper	716541.ECL_02715	NA	NA
UHGV-0131472_10	PHROG	phrog_27579	NA	unknown function
UHGV-0131472_11	PHROG	phrog_4587	NA	unknown function
UHGV-0131472_12	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0131472_12	PHROG	phrog_6201	NA	unknown function
UHGV-0131472_12	UniRef90	UniRef90_A0A2J0PEX5	HTH cro/C1-type domain-containing protein	NA
UHGV-0131472_12	eggNOG-mapper	693444.D782_2512	Peptidase S24-like	NA
UHGV-0131472_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131472_12	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0131472_12	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0131472_12	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0131472_13	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0131472_13	UniRef90	UniRef90_UPI00094189AA	YdaS family helix-turn-helix protein	NA
UHGV-0131472_13	eggNOG-mapper	709797.CSIRO_1933	Nitrate reductase delta subunit	NA
UHGV-0131472_13	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0131472_13	COG	COG3381	Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation	NA
UHGV-0131472_14	PHROG	phrog_4617	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0131472_14	UniRef90	UniRef90_UPI001CF93925	transcriptional regulator	NA
UHGV-0131472_15	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0131472_15	UniRef90	UniRef90_UPI000FD7A00A	helix-turn-helix domain-containing protein	NA
UHGV-0131472_15	eggNOG-mapper	1399774.JDWH01000024_gene4224	Helix-turn-helix domain	NA
UHGV-0131472_15	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0131472_15	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0131472_15	Structural annotation	PF13730, MF_01909, TIGR02702, COG4738	NA	NA
UHGV-0131472_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0131472_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0131472_16	UniRef90	UniRef90_A0A8B3V4D0	DNA replication protein DnaC	NA
UHGV-0131472_16	eggNOG-mapper	1399774.JDWH01000024_gene4225	DNA replication protein	NA
UHGV-0131472_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0131472_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0131472_16	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0131472_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0131472_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0131472_17	UniRef90	UniRef90_A0A1Z3MTP9	DNA helicase	NA
UHGV-0131472_17	eggNOG-mapper	1399774.JDWH01000024_gene4226	DnaB-like helicase N terminal domain	NA
UHGV-0131472_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0131472_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0131472_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0131472_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0131472_18	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0131472_18	UniRef90	UniRef90_A0A0F1AY06	Molecular chaperone	NA
UHGV-0131472_18	eggNOG-mapper	1197719.A464_2031	Antitermination protein	NA
UHGV-0131472_18	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0131472_18	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0131472_18	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0131472_18	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0131472_19	PHROG	phrog_7003	NA	unknown function
UHGV-0131472_19	eggNOG-mapper	94122.Shewana3_2179	NA	NA
UHGV-0131472_20	PHROG	phrog_198	holin	lysis
UHGV-0131472_20	UniRef90	UniRef90_A0A8E6MF23	Phage holin family protein	NA
UHGV-0131472_20	eggNOG-mapper	754331.AEME01000001_gene4288	Putative phage holin	NA
UHGV-0131472_20	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0131472_20	Structural annotation	PF16931	NA	NA
UHGV-0131472_21	PHROG	phrog_217	holin	lysis
UHGV-0131472_21	UniRef90	UniRef90_A0A8H9TP83	Phage holin family protein	NA
UHGV-0131472_21	eggNOG-mapper	469595.CSAG_00950	Putative 3TM holin, Phage_holin_3	NA
UHGV-0131472_21	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0131472_22	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0131472_22	PHROG	phrog_12853	NA	unknown function
UHGV-0131472_22	UniRef90	UniRef90_A0A0V9JGI2	PG_binding_3 domain-containing protein	NA
UHGV-0131472_22	eggNOG-mapper	911008.GLAD_00552	secretion activating protein	NA
UHGV-0131472_22	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0131472_22	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0131472_22	COG	COG3926	Lysozyme family protein	NA
UHGV-0131472_22	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0131472_23	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0131472_23	UniRef90	UniRef90_UPI001C5AC0A9	NA	NA
UHGV-0131472_23	eggNOG-mapper	906669.G8C7W1_9CAUD	NA	NA
UHGV-0131472_24	PHROG	phrog_1275	Rz-like spanin	lysis
UHGV-0131472_24	eggNOG-mapper	1218086.BBNB01000014_gene2069	NA	NA
UHGV-0131472_25	PHROG	phrog_5415	NA	unknown function
UHGV-0131472_26	PHROG	phrog_31586	NA	unknown function
UHGV-0131472_27	PHROG	phrog_3909	NA	unknown function
UHGV-0131472_28	PHROG	phrog_13555	NA	unknown function
UHGV-0131472_28	UniRef90	UniRef90_UPI00079A8018	NA	NA
UHGV-0131472_28	eggNOG-mapper	1115515.EV102420_11_00250	NA	NA
UHGV-0131472_28	Pfam	PF09327	NA	DUF1983
UHGV-0131472_29	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0131472_29	UniRef90	UniRef90_UPI001BD1E85B	HNH endonuclease	NA
UHGV-0131472_29	eggNOG-mapper	1115515.EV102420_11_00240	HNH nucleases	NA
UHGV-0131472_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0131472_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0131472_30	PHROG	phrog_24041	NA	unknown function
UHGV-0131472_30	UniRef90	UniRef90_UPI00084BD4C8	serine acetyltransferase	NA
UHGV-0131472_30	eggNOG-mapper	1147143.K7P7A6_9CAUD	NA	NA
UHGV-0131472_31	PHROG	phrog_12559	terminase small subunit	head and packaging
UHGV-0131472_31	UniRef90	UniRef90_Q63VV1	Putative exported protein	NA
UHGV-0131472_31	eggNOG-mapper	1115515.EV102420_11_00220	NA	NA
UHGV-0131472_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0131472_32	UniRef90	UniRef90_A0A090V0X1	Putative terminase large subunit	NA
UHGV-0131472_32	eggNOG-mapper	1115515.EV102420_11_00210	Phage Terminase	NA
UHGV-0131472_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0131472_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0131472_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0131472_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0131472_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0131472_33	UniRef90	UniRef90_A0A090V0Q9	Putative portal protein	NA
UHGV-0131472_33	eggNOG-mapper	1115515.EV102420_11_00200	Phage portal protein	NA
UHGV-0131472_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0131472_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0131472_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0131472_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0131472_34	KOfam	K06904	NA	NA
UHGV-0131472_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0131472_34	UniRef90	UniRef90_A0A482II40	Prohead protease	NA
UHGV-0131472_34	eggNOG-mapper	1115515.EV102420_11_00190	Caudovirus prohead serine protease	NA
UHGV-0131472_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0131472_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0131472_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0131472_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0131472_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0131472_35	UniRef90	UniRef90_A0A286S1R4	Major capsid protein	NA
UHGV-0131472_35	eggNOG-mapper	1115515.EV102420_11_00180	capsid protein	NA
UHGV-0131472_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0131472_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0131472_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0131472_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0131472_36	PHROG	phrog_18204	NA	unknown function
UHGV-0131472_37	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0131472_37	UniRef90	UniRef90_UPI0007966636	head-tail connector protein	NA
UHGV-0131472_37	eggNOG-mapper	1115515.EV102420_11_00160	Phage gp6-like head-tail connector protein	NA
UHGV-0131472_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0131472_37	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0131472_38	PHROG	phrog_2612	NA	unknown function
UHGV-0131472_38	eggNOG-mapper	10742.Q9MCV3_BPHK0	NA	NA
UHGV-0131472_39	PHROG	phrog_25	head closure Hc1	connector
UHGV-0131472_39	UniRef90	UniRef90_UPI000774F679	phage head closure protein	NA
UHGV-0131472_39	eggNOG-mapper	1115515.EV102420_11_00140	head-tail adaptor	NA
UHGV-0131472_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0131472_39	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0131472_39	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0131472_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0131472_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0131472_40	UniRef90	UniRef90_UPI00183FDE43	HK97 gp10 family phage protein	NA
UHGV-0131472_40	eggNOG-mapper	1115515.EV102420_11_00130	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0131472_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0131472_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0131472_40	Structural annotation	TIGR01725	NA	NA
UHGV-0131472_41	PHROG	phrog_78	tail terminator	connector
UHGV-0131472_41	UniRef90	UniRef90_UPI0007751F55	NA	NA
UHGV-0131472_41	eggNOG-mapper	1115515.EV102420_11_00120	NA	NA
UHGV-0131472_41	Pfam	PF11367	NA	DUF3168
UHGV-0131472_41	Structural annotation	PF11367	NA	NA
UHGV-0131472_42	PHROG	phrog_158	major tail protein	tail
UHGV-0131472_42	UniRef90	UniRef90_UPI000774E88A	phage tail protein	NA
UHGV-0131472_42	eggNOG-mapper	10742.Q9MCU9_BPHK0	Pfam:Phage_TTP_11	NA
UHGV-0131472_42	Pfam	PF16460	Phage tail tube, TTP, lambda-like	Phage_TTP_11
UHGV-0131472_42	Structural annotation	PF16460, TIGR02241, COG5437	NA	NA
UHGV-0131472_43	PHROG	phrog_1749	tail assembly chaperone	tail
UHGV-0131472_43	UniRef90	UniRef90_K7PGR1	Tail assembly chaperone	NA
UHGV-0131472_43	eggNOG-mapper	10742.Q9MCU8_BPHK0	Pfam:Phage_TAC_13	NA
UHGV-0131472_43	Pfam	PF16459	Phage tail assembly chaperone, TAC	Phage_TAC_13
UHGV-0131472_44	PHROG	phrog_5297	tail protein	tail
UHGV-0131472_44	UniRef90	UniRef90_A0A345C8T2	Phage tail protein	NA
UHGV-0131472_44	eggNOG-mapper	10742.Q9MCU7_BPHK0	NA	NA
UHGV-0131472_45	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0131472_45	UniRef90	UniRef90_UPI0007979EF0	phage tail tape measure protein	NA
UHGV-0131472_45	eggNOG-mapper	1147143.K7P6S7_9CAUD	peptidoglycan catabolic process	NA
UHGV-0131472_45	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0131472_45	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0131472_45	Structural annotation	MF_04138, TIGR01541, COG5281	NA	NA
UHGV-0131472_46	PHROG	phrog_14	minor tail protein	tail
UHGV-0131472_46	UniRef90	UniRef90_A0A4U6HP88	Phage tail protein	NA
UHGV-0131472_46	eggNOG-mapper	10742.Q9MCU5_BPHK0	Phage minor tail protein	NA
UHGV-0131472_46	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0131472_46	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0131472_47	PHROG	phrog_18	minor tail protein	tail
UHGV-0131472_47	UniRef90	UniRef90_I4SWM7	Phage minor tail protein L	NA
UHGV-0131472_47	eggNOG-mapper	10742.Q9MCU4_BPHK0	Phage minor tail protein L	NA
UHGV-0131472_47	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0131472_47	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0131472_47	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0131472_48	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0131472_48	PHROG	phrog_30	minor tail protein	tail
UHGV-0131472_48	UniRef90	UniRef90_A0A7Z8BXK9	Peptidase P60	NA
UHGV-0131472_48	eggNOG-mapper	1147158.K7PGV2_9CAUD	peptidoglycan catabolic process	NA
UHGV-0131472_48	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-0131472_48	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0131472_48	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-0131472_49	PHROG	phrog_914	NA	unknown function
UHGV-0131472_49	UniRef90	UniRef90_A0A0T9RL58	Putative phage-related lipoprotein	NA
UHGV-0131472_49	eggNOG-mapper	390235.PputW619_3929	NA	NA
UHGV-0131472_49	Structural annotation	PF12092	NA	NA
UHGV-0131472_50	PHROG	phrog_32	tail assembly protein	tail
UHGV-0131472_50	UniRef90	UniRef90_UPI000A3C6C7D	tail assembly protein	NA
UHGV-0131472_50	eggNOG-mapper	1147154.K7PGY0_9CAUD	virus tail assembly	NA
UHGV-0131472_50	Structural annotation	PF06805, NF008347, COG4723	NA	NA