UHGV-0131590

Genome information

Genome length 17,660 bps

CDS count 23

Completeness 50.12% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131590
vOTU ID	vOTU-039192
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_366864
BioSample	SAMN03283285
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.93
Jumbo phage	No

Genome content
Genome length	17,660 bps
GC content	53.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	93.82%
Average CDS length	722.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131590_2	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0131590_2	UniRef90	UniRef90_A0A1M5WHB2	5-methylcytosine-specific restriction enzyme A	NA
UHGV-0131590_2	eggNOG-mapper	706434.HMPREF9429_00382	endonuclease activity	NA
UHGV-0131590_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0131590_3	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0131590_3	UniRef90	UniRef90_UPI0003615350	phage terminase small subunit P27 family	NA
UHGV-0131590_3	eggNOG-mapper	471875.RUMLAC_02232	Phage terminase, small subunit	NA
UHGV-0131590_3	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0131590_3	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0131590_3	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0131590_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0131590_4	UniRef90	UniRef90_UPI00164ABF0B	terminase large subunit	NA
UHGV-0131590_4	eggNOG-mapper	1122919.KB905559_gene1359	Terminase	NA
UHGV-0131590_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0131590_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0131590_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0131590_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0131590_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0131590_5	UniRef90	UniRef90_A0A1V5WBB3	Phage portal protein	NA
UHGV-0131590_5	eggNOG-mapper	1286171.EAL2_808p01710	Phage portal protein	NA
UHGV-0131590_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0131590_5	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0131590_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0131590_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0131590_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0131590_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0131590_6	UniRef90	UniRef90_A0A1V5WAY6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0131590_6	eggNOG-mapper	1120971.AUCA01000037_gene2897	Serine dehydrogenase proteinase	NA
UHGV-0131590_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0131590_6	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0131590_6	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0131590_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0131590_7	UniRef90	UniRef90_A0A1V5WB68	Phage capsid family protein	NA
UHGV-0131590_7	eggNOG-mapper	1121324.CLIT_8c00760	phage major capsid protein, HK97 family	NA
UHGV-0131590_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0131590_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0131590_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0131590_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0131590_8	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0131590_8	UniRef90	UniRef90_UPI00164A2E93	head-tail connector protein	NA
UHGV-0131590_8	eggNOG-mapper	1449126.JQKL01000051_gene3168	Phage gp6-like head-tail connector protein	NA
UHGV-0131590_8	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0131590_8	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0131590_8	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0131590_9	PHROG	phrog_25	head closure Hc1	connector
UHGV-0131590_9	UniRef90	UniRef90_UPI00164B7AD3	phage head closure protein	NA
UHGV-0131590_9	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0131590_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0131590_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0131590_10	PHROG	phrog_78	tail terminator	connector
UHGV-0131590_10	eggNOG-mapper	994573.T472_0211950	NA	NA
UHGV-0131590_10	Structural annotation	PF05657	NA	NA
UHGV-0131590_11	eggNOG-mapper	349161.Dred_2601	Phage protein, HK97 gp10 family	NA
UHGV-0131590_11	Structural annotation	TIGR01725	NA	NA
UHGV-0131590_12	PHROG	phrog_88	major tail protein	tail
UHGV-0131590_12	UniRef90	UniRef90_N1ZV08	Phi13 family phage major tail protein	NA
UHGV-0131590_12	eggNOG-mapper	97139.C824_05965	NA	NA
UHGV-0131590_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0131590_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0131590_13	PHROG	phrog_2115	tail protein	tail
UHGV-0131590_13	Structural annotation	PF11836	NA	NA
UHGV-0131590_14	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0131590_14	UniRef90	UniRef90_UPI001D1265F0	phage tail tape measure protein	NA
UHGV-0131590_14	eggNOG-mapper	333138.LQ50_04250	Phage tail tape measure protein	NA
UHGV-0131590_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0131590_14	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0131590_15	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0131590_15	UniRef90	UniRef90_A0A428N2K2	Fibronectin type-III domain-containing protein	NA
UHGV-0131590_15	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0131590_15	Structural annotation	PF19077, PF06199, PF16794, PF08329, MF_04116, NF040520, COG3401, COG3499	NA	NA
UHGV-0131590_16	PHROG	phrog_26795	NA	unknown function
UHGV-0131590_16	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-0131590_16	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0131590_17	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0131590_18	Structural annotation	PF10651	NA	NA
UHGV-0131590_19	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0131590_19	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA