UHGV-0131726

Genome information

Genome length 36,633 bps

CDS count 41

Completeness 90.89% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131726
vOTU ID	vOTU-067612
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_385483
BioSample	NA
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.35
Jumbo phage	No

Genome content
Genome length	36,633 bps
GC content	40.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	93.48%
Average CDS length	839.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131726_1	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0131726_1	UniRef90	UniRef90_UPI000E4F568F	conserved phage C-terminal domain-containing protein	NA
UHGV-0131726_1	eggNOG-mapper	208596.CAR_c08910	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0131726_1	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0131726_1	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0131726_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0131726_2	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0131726_2	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0131726_2	UniRef90	UniRef90_A0A412UNR0	SF4 helicase domain-containing protein	NA
UHGV-0131726_2	eggNOG-mapper	573061.Clocel_4359	Participates in initiation and elongation during chromosome replication	NA
UHGV-0131726_2	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0131726_2	COG	COG0305	Replicative DNA helicase	NA
UHGV-0131726_2	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0131726_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0131726_3	PHROG	phrog_291	endolysin	lysis
UHGV-0131726_3	UniRef90	UniRef90_A0A3D3D9J4	PG_binding_1 domain-containing protein	NA
UHGV-0131726_3	eggNOG-mapper	663278.Ethha_1853	hydrolase, family 25	NA
UHGV-0131726_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0131726_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0131726_3	COG	COG1388	LysM repeat	NA
UHGV-0131726_3	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0131726_4	PHROG	phrog_419	NA	unknown function
UHGV-0131726_4	UniRef90	UniRef90_A0A7U6KCT4	NA	NA
UHGV-0131726_4	eggNOG-mapper	596323.HMPREF0554_0262	NA	NA
UHGV-0131726_4	Structural annotation	PF14083	NA	NA
UHGV-0131726_5	PHROG	phrog_443	holin	lysis
UHGV-0131726_5	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0131726_5	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0131726_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0131726_5	Structural annotation	PF16945	NA	NA
UHGV-0131726_6	PHROG	phrog_4105	NA	unknown function
UHGV-0131726_6	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-0131726_8	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0131726_8	PHROG	phrog_22978	NA	unknown function
UHGV-0131726_8	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA
UHGV-0131726_8	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0131726_10	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0131726_12	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0131726_12	UniRef90	UniRef90_UPI00164CB5EA	dockerin type I repeat-containing protein	NA
UHGV-0131726_12	eggNOG-mapper	1321782.HMPREF1986_00351	NA	NA
UHGV-0131726_12	Structural annotation	PF11134, NF038015, TIGR03721, COG3823	NA	NA
UHGV-0131726_13	PHROG	phrog_12105	NA	unknown function
UHGV-0131726_15	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0131726_15	UniRef90	UniRef90_A0A3D3D6D4	N4-gp56 family major capsid protein	NA
UHGV-0131726_15	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0131726_15	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0131726_16	PHROG	phrog_13908	NA	unknown function
UHGV-0131726_16	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0131726_17	UniRef90	UniRef90_A0A6I3PNK9	Ribosomal-processing cysteine protease Prp	NA
UHGV-0131726_17	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0131726_18	PHROG	phrog_156	portal protein	head and packaging
UHGV-0131726_18	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0131726_18	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0131726_18	Structural annotation	PF16510, MF_04120, TIGR01542, COG4383	NA	NA
UHGV-0131726_19	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0131726_19	UniRef90	UniRef90_A0A3D3D7U5	Terminase-like family protein	NA
UHGV-0131726_19	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-0131726_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0131726_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0131726_19	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0131726_20	UniRef90	UniRef90_A0A3D3D686	HTH psq-type domain-containing protein	NA
UHGV-0131726_20	Structural annotation	PF06056	NA	NA
UHGV-0131726_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0131726_21	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0131726_21	eggNOG-mapper	632245.CLP_2642	NA	NA
UHGV-0131726_21	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0131726_25	PHROG	phrog_824	NA	unknown function
UHGV-0131726_25	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0131726_25	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0131726_25	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0131726_25	Structural annotation	PF08774	NA	NA
UHGV-0131726_26	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0131726_26	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0131726_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0131726_26	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0131726_28	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0131726_28	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0131726_28	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-0131726_28	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0131726_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0131726_28	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0131726_28	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0131726_28	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0131726_41	UniRef90	UniRef90_A0A6I3PK55	Helix-turn-helix domain-containing protein	NA
UHGV-0131726_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131726_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0131726_41	Structural annotation	PF13443, NF041951, COG1396	NA	NA