UHGV-0131731

Genome information

Genome length 37,387 bps

CDS count 55

Completeness 93.16% (high-quality)

geNomad score 0.9507

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131731
vOTU ID	vOTU-013550
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_359916
BioSample	SAMN02675046
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9507
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.5
Jumbo phage	No

Genome content
Genome length	37,387 bps
GC content	42.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.75%
Average CDS length	646.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131731_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0131731_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0131731_1	UniRef90	UniRef90_UPI00189F9D33	recombinase family protein	NA
UHGV-0131731_1	eggNOG-mapper	999413.HMPREF1094_00247	Recombinase	NA
UHGV-0131731_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0131731_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0131731_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0131731_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0131731_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0131731_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0131731_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0131731_3	UniRef90	UniRef90_A0A898FMD6	Helix-turn-helix domain-containing protein	NA
UHGV-0131731_3	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0131731_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131731_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0131731_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0131731_3	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0131731_4	UniRef90	UniRef90_A0A898FJD4	Helix-turn-helix domain-containing protein	NA
UHGV-0131731_4	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0131731_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0131731_4	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0131731_9	PHROG	phrog_22529	NA	unknown function
UHGV-0131731_9	UniRef90	UniRef90_A0A898FTM7	3D domain-containing protein	NA
UHGV-0131731_9	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0131731_9	Pfam	PF06725	3D domain	3D
UHGV-0131731_9	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0131731_9	Structural annotation	PF06725, COG3584	NA	NA
UHGV-0131731_10	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0131731_10	PHROG	phrog_24603	NA	unknown function
UHGV-0131731_10	UniRef90	UniRef90_N9WW05	Spo0A_C domain-containing protein	NA
UHGV-0131731_10	eggNOG-mapper	1123405.AUMM01000010_gene1206	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0131731_10	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0131731_10	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0131731_10	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0131731_12	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0131731_12	PHROG	phrog_1499	NA	unknown function
UHGV-0131731_12	UniRef90	UniRef90_N9VB14	AAA_23 domain-containing protein	NA
UHGV-0131731_12	eggNOG-mapper	999413.HMPREF1094_00236	AAA ATPase domain	NA
UHGV-0131731_12	Pfam	PF13476	AAA domain	AAA_23
UHGV-0131731_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0131731_12	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0131731_13	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0131731_13	UniRef90	UniRef90_UPI001EDD2096	ATP-binding protein	NA
UHGV-0131731_13	eggNOG-mapper	552396.HMPREF0863_02438	AAA domain	NA
UHGV-0131731_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-0131731_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0131731_14	PHROG	phrog_2698	NA	unknown function
UHGV-0131731_14	UniRef90	UniRef90_UPI001AEC2157	NA	NA
UHGV-0131731_14	eggNOG-mapper	1232449.BAHV02000010_gene2698	NA	NA
UHGV-0131731_14	Structural annotation	PF05037	NA	NA
UHGV-0131731_15	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0131731_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0131731_15	UniRef90	UniRef90_A0A1Y4QSI3	DEAD/DEAH box helicase	NA
UHGV-0131731_15	eggNOG-mapper	999413.HMPREF1094_00233	helicase superfamily c-terminal domain	NA
UHGV-0131731_15	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0131731_15	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0131731_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0131731_15	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0131731_15	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0131731_16	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0131731_16	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0131731_16	UniRef90	UniRef90_N9WWG5	PriCT_2 domain-containing protein	NA
UHGV-0131731_16	eggNOG-mapper	999413.HMPREF1094_00232	Primase C terminal 2 (PriCT-2)	NA
UHGV-0131731_16	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0131731_16	Pfam	PF13481	AAA domain	AAA_25
UHGV-0131731_16	COG	COG3598	RecA-family ATPase	NA
UHGV-0131731_16	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0131731_17	Structural annotation	PF17574	NA	NA
UHGV-0131731_18	PHROG	phrog_23707	NA	unknown function
UHGV-0131731_18	UniRef90	UniRef90_A0A7X5CDD7	Alanine racemase	NA
UHGV-0131731_18	eggNOG-mapper	552398.HMPREF0866_01624	NA	NA
UHGV-0131731_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0131731_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0131731_20	UniRef90	UniRef90_A0A4U1D0A0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0131731_20	eggNOG-mapper	999413.HMPREF1094_00229	Endodeoxyribonuclease RusA	NA
UHGV-0131731_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0131731_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0131731_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0131731_21	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0131731_21	UniRef90	UniRef90_A0A1E7D7M3	Putative phage protein	NA
UHGV-0131731_21	eggNOG-mapper	999413.HMPREF1094_00228	NA	NA
UHGV-0131731_21	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0131731_22	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0131731_22	UniRef90	UniRef90_UPI00143844BF	HNH endonuclease	NA
UHGV-0131731_22	eggNOG-mapper	999413.HMPREF1094_00227	HNH endonuclease	NA
UHGV-0131731_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0131731_22	Structural annotation	PF13392	NA	NA
UHGV-0131731_26	eggNOG-mapper	999413.HMPREF1094_00224	NA	NA
UHGV-0131731_27	PHROG	phrog_5200	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0131731_27	UniRef90	UniRef90_UPI000E4A45C8	HNH endonuclease	NA
UHGV-0131731_27	eggNOG-mapper	309799.DICTH_0082	endonuclease activity	NA
UHGV-0131731_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0131731_29	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0131731_29	UniRef90	UniRef90_UPI0014382D1D	phage terminase small subunit	NA
UHGV-0131731_29	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0131731_29	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0131731_29	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0131731_29	COG	COG5484	NA	NA
UHGV-0131731_29	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0131731_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0131731_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0131731_30	UniRef90	UniRef90_U5FBJ7	PBSX family phage terminase, large subunit	NA
UHGV-0131731_30	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-0131731_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0131731_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0131731_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0131731_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0131731_31	UniRef90	UniRef90_UPI001430A874	phage portal protein	NA
UHGV-0131731_31	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-0131731_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0131731_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0131731_32	UniRef90	UniRef90_UPI001D07CE98	phage minor capsid protein	NA
UHGV-0131731_32	eggNOG-mapper	552396.HMPREF0863_00280	Phage minor capsid protein 2	NA
UHGV-0131731_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0131731_32	COG	COG2369	NA	NA
UHGV-0131731_34	eggNOG-mapper	999413.HMPREF1094_00217	NA	NA
UHGV-0131731_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0131731_35	UniRef90	UniRef90_UPI001D0A686C	phage scaffolding protein	NA
UHGV-0131731_35	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-0131731_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0131731_35	Structural annotation	PF06810	NA	NA
UHGV-0131731_36	PHROG	phrog_212	major head protein	head and packaging
UHGV-0131731_36	UniRef90	UniRef90_UPI001E4A818F	phage capsid protein	NA
UHGV-0131731_36	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-0131731_36	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0131731_38	KOfam	K19507	gfrB; fructoselysine/glucoselysine PTS system EIIB component [EC:2.7.1.-]	NA
UHGV-0131731_38	UniRef90	UniRef90_UPI001BA5D64C	putative minor capsid protein	NA
UHGV-0131731_38	Structural annotation	PF20536	NA	NA
UHGV-0131731_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0131731_39	UniRef90	UniRef90_UPI0014302C23	minor capsid protein	NA
UHGV-0131731_39	eggNOG-mapper	552396.HMPREF0863_00274	Minor capsid protein	NA
UHGV-0131731_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0131731_39	Structural annotation	PF11114	NA	NA
UHGV-0131731_40	Structural annotation	PF16807	NA	NA
UHGV-0131731_41	PHROG	phrog_3099	NA	unknown function
UHGV-0131731_41	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-0131731_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0131731_43	PHROG	phrog_706	NA	unknown function
UHGV-0131731_43	UniRef90	UniRef90_UPI0014384D64	Gp15 family bacteriophage protein	NA
UHGV-0131731_43	eggNOG-mapper	552396.HMPREF0863_00270	Bacteriophage Gp15 protein	NA
UHGV-0131731_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0131731_43	Structural annotation	PF06854	NA	NA
UHGV-0131731_44	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0131731_44	UniRef90	UniRef90_A0A3E2VT84	Phage tail tape measure protein	NA
UHGV-0131731_44	eggNOG-mapper	552396.HMPREF0863_00269	Phage tail tape measure protein, TP901 family	NA
UHGV-0131731_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0131731_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0131731_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0131731_44	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0131731_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0131731_45	eggNOG-mapper	411459.RUMOBE_00925	phage tail	NA
UHGV-0131731_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0131731_45	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0131731_46	PHROG	phrog_18110	NA	unknown function
UHGV-0131731_46	UniRef90	UniRef90_R6UNP2	Phage minor structural protein	NA
UHGV-0131731_46	eggNOG-mapper	908340.HMPREF9406_0815	NA	NA
UHGV-0131731_46	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0131731_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0131731_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0131731_46	COG	COG4926	Phage-related protein	NA
UHGV-0131731_46	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0131731_48	PHROG	phrog_38417	hyaluronidase	other
UHGV-0131731_49	eggNOG-mapper	908340.HMPREF9406_0812	NA	NA
UHGV-0131731_50	eggNOG-mapper	908340.HMPREF9406_0812	NA	NA
UHGV-0131731_51	Structural annotation	NF040910	NA	NA
UHGV-0131731_52	PHROG	phrog_199	holin	lysis
UHGV-0131731_52	UniRef90	UniRef90_N9WWD9	Toxin secretion/phage lysis holin	NA
UHGV-0131731_52	eggNOG-mapper	908340.HMPREF9406_2563	Bacteriophage holin family	NA
UHGV-0131731_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0131731_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0131731_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0131731_53	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0131731_53	PHROG	phrog_2742	endolysin	lysis
UHGV-0131731_53	UniRef90	UniRef90_H1BAK9	MurNAc-LAA domain-containing protein	NA
UHGV-0131731_53	eggNOG-mapper	908340.HMPREF9406_0809	pathogenesis	NA
UHGV-0131731_53	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0131731_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0131731_53	Structural annotation	PF01520, PF08460, MF_00417, TIGR02883, COG0860, COG4991	NA	NA