UHGV-0131812

Genome information

Genome length 31,561 bps

CDS count 46

Completeness 69.76% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131812
vOTU ID	vOTU-036854
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_379285
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.39
Jumbo phage	No

Genome content
Genome length	31,561 bps
GC content	53.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	88.33%
Average CDS length	612.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131812_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0131812_1	UniRef90	UniRef90_R5KM01	HTH cro/C1-type domain-containing protein	NA
UHGV-0131812_1	eggNOG-mapper	877421.AUJT01000001_gene1761	Helix-turn-helix XRE-family like proteins	NA
UHGV-0131812_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131812_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0131812_1	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0131812_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0131812_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0131812_2	UniRef90	UniRef90_A0A849CV84	Recombinase family protein	NA
UHGV-0131812_2	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-0131812_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0131812_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0131812_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0131812_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0131812_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0131812_3	UniRef90	UniRef90_A0A1C6L0N4	HTH cro/C1-type domain-containing protein	NA
UHGV-0131812_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0131812_3	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0131812_5	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0131812_5	PHROG	phrog_19349	NA	unknown function
UHGV-0131812_5	UniRef90	UniRef90_D7GXC0	Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains)	NA
UHGV-0131812_5	eggNOG-mapper	742740.HMPREF9474_02375	lytic transglycosylase activity	NA
UHGV-0131812_5	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0131812_5	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0131812_5	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0131812_7	KOfam	K03552	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	NA
UHGV-0131812_7	UniRef90	UniRef90_D7GXC2	Archaeal holliday junction resolvase (Hjc)	NA
UHGV-0131812_7	eggNOG-mapper	1449050.JNLE01000003_gene3909	Recombination protein U	NA
UHGV-0131812_7	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0131812_7	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0131812_8	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0131812_8	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0131812_8	UniRef90	UniRef90_R6P528	DNA or RNA helicases of superfamily II	NA
UHGV-0131812_8	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-0131812_8	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0131812_8	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0131812_8	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0131812_8	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0131812_9	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0131812_9	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0131812_9	UniRef90	UniRef90_A0A8D9PDD1	DNA (Cytosine 5) methyltransferase	NA
UHGV-0131812_9	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0131812_9	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0131812_9	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0131812_9	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0131812_10	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0131812_10	UniRef90	UniRef90_R6MZ51	DNA polymerase elongation subunit (Family B)	NA
UHGV-0131812_10	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0131812_10	Pfam	PF04404	ERF superfamily	ERF
UHGV-0131812_10	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0131812_10	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0131812_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0131812_11	UniRef90	UniRef90_A0A1C6L0E5	Putative phage-type endonuclease	NA
UHGV-0131812_11	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-0131812_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0131812_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0131812_11	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0131812_13	Structural annotation	PF05037	NA	NA
UHGV-0131812_14	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0131812_14	PHROG	phrog_5889	NA	unknown function
UHGV-0131812_14	UniRef90	UniRef90_A0A1C5MUY3	Predicted HD-superfamily hydrolase	NA
UHGV-0131812_14	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0131812_14	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0131812_14	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-0131812_16	PHROG	phrog_6247	DNA topoisomerase	DNA, RNA and nucleotide metabolism
UHGV-0131812_16	eggNOG-mapper	1536772.R70723_06570	NA	NA
UHGV-0131812_16	Structural annotation	PF21180, MF_00132, NF003335, COG4026	NA	NA
UHGV-0131812_17	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0131812_18	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0131812_18	UniRef90	UniRef90_R6P545	Primase C terminal 1 (PriCT-1)./Bifunctional DNA primase/polymerase N-terminal	NA
UHGV-0131812_18	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0131812_18	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0131812_18	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0131812_18	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0131812_19	PHROG	phrog_474	phosphofructokinase	other
UHGV-0131812_19	UniRef90	UniRef90_A0A1Y4J446	NA	NA
UHGV-0131812_19	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0131812_19	Pfam	PF19905	NA	DUF6378
UHGV-0131812_19	Structural annotation	PF19905	NA	NA
UHGV-0131812_21	PHROG	phrog_21980	NA	unknown function
UHGV-0131812_21	UniRef90	UniRef90_A0A1C6L0C5	NA	NA
UHGV-0131812_21	eggNOG-mapper	742740.HMPREF9474_02315	NA	NA
UHGV-0131812_21	Pfam	PF19789	NA	DUF6273
UHGV-0131812_21	Structural annotation	PF19789	NA	NA
UHGV-0131812_22	PHROG	phrog_2598	NA	unknown function
UHGV-0131812_22	UniRef90	UniRef90_E9S8C3	NA	NA
UHGV-0131812_22	eggNOG-mapper	246199.CUS_4749	NA	NA
UHGV-0131812_22	Pfam	PF03235	NA	DUF262
UHGV-0131812_22	COG	COG1479	NA	NA
UHGV-0131812_22	Structural annotation	PF03235, MF_02015, NF041060, COG1479	NA	NA
UHGV-0131812_24	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0131812_24	UniRef90	UniRef90_R6NFT7	Phage/plasmid primase P4 family C-terminal domain	NA
UHGV-0131812_24	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-0131812_24	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0131812_24	Pfam	PF19263	NA	DUF5906
UHGV-0131812_24	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0131812_24	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0131812_24	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0131812_24	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0131812_25	PHROG	phrog_7314	NA	unknown function
UHGV-0131812_26	PHROG	phrog_1233	NA	unknown function
UHGV-0131812_26	UniRef90	UniRef90_UPI00117B54E4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0131812_26	Structural annotation	PF06114	NA	NA
UHGV-0131812_27	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0131812_27	UniRef90	UniRef90_A0A2N5PMN0	Nucleotide pyrophosphohydrolase	NA
UHGV-0131812_27	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0131812_27	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0131812_27	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0131812_27	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0131812_30	UniRef90	UniRef90_A0A0F0C267	HTH cro/C1-type domain-containing protein	NA
UHGV-0131812_30	eggNOG-mapper	485915.Dret_1613	DNA-packaging protein gp3	NA
UHGV-0131812_35	PHROG	phrog_6244	NA	unknown function
UHGV-0131812_35	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0131812_36	UniRef90	UniRef90_R6P559	DNA-binding helix-turn-helix protein	NA
UHGV-0131812_36	eggNOG-mapper	1235800.C819_01469	NA	NA
UHGV-0131812_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131812_36	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0131812_37	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0131812_37	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0131812_37	UniRef90	UniRef90_R6N9Q2	Resolvase	NA
UHGV-0131812_37	eggNOG-mapper	1341157.RF007C_05200	resolvase	NA
UHGV-0131812_37	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0131812_37	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0131812_37	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0131812_38	UniRef90	UniRef90_A0A3N0HWL9	NA	NA
UHGV-0131812_38	eggNOG-mapper	881621.LIV_0548	NA	NA
UHGV-0131812_38	Pfam	PF16729	NA	DUF5067
UHGV-0131812_39	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0131812_39	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0131812_39	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0131812_39	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0131812_39	COG	COG5410	NA	NA
UHGV-0131812_39	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0131812_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-0131812_40	UniRef90	UniRef90_A0A1C6L010	Phage portal protein, SPP1 family	NA
UHGV-0131812_40	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0131812_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0131812_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0131812_42	PHROG	phrog_544	major head protein	head and packaging
UHGV-0131812_42	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0131812_42	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0131812_42	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0131812_43	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0131812_44	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0131812_44	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0131812_44	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0131812_44	Structural annotation	TIGR01560	NA	NA
UHGV-0131812_45	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA