UHGV-0131923

Genome information

Genome length 36,352 bps

CDS count 44

Completeness 95.63% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131923
vOTU ID	vOTU-014717
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_389389
BioSample	SAMN04329766
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.94
Jumbo phage	No

Genome content
Genome length	36,352 bps
GC content	37.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.64%
Average CDS length	751.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131923_1	KOfam	K14059	int; integrase	NA
UHGV-0131923_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0131923_1	UniRef90	UniRef90_R6AKI6	Site-specific recombinase phage integrase family	NA
UHGV-0131923_1	eggNOG-mapper	536233.CLO_0855	Arm DNA-binding domain	NA
UHGV-0131923_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0131923_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0131923_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0131923_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0131923_2	PHROG	phrog_1847	NA	unknown function
UHGV-0131923_2	UniRef90	UniRef90_A0A174S171	Membrane-bound metallopeptidase	NA
UHGV-0131923_2	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0131923_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0131923_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0131923_2	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0131923_3	PHROG	phrog_20936	NA	unknown function
UHGV-0131923_3	UniRef90	UniRef90_UPI0013E038FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0131923_3	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0131923_3	Structural annotation	PF06114	NA	NA
UHGV-0131923_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0131923_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0131923_4	UniRef90	UniRef90_A0A413YU20	Helix-turn-helix domain-containing protein	NA
UHGV-0131923_4	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-0131923_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0131923_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131923_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0131923_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0131923_5	UniRef90	UniRef90_A0A356C6B4	XRE family transcriptional regulator	NA
UHGV-0131923_5	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0131923_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131923_9	Structural annotation	COG1321	NA	NA
UHGV-0131923_11	UniRef90	UniRef90_A0A356C6A4	HTH_17 domain-containing protein	NA
UHGV-0131923_11	eggNOG-mapper	318464.IO99_13850	Helix-turn-helix domain	NA
UHGV-0131923_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0131923_11	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0131923_11	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0131923_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0131923_12	eggNOG-mapper	1235793.C809_03589	NA	NA
UHGV-0131923_12	Structural annotation	PF21578	NA	NA
UHGV-0131923_13	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0131923_13	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0131923_13	UniRef90	UniRef90_A0A3B8UHR5	RNase H type-1 domain-containing protein	NA
UHGV-0131923_13	eggNOG-mapper	1235800.C819_00514	RNase H	NA
UHGV-0131923_13	Pfam	PF00075	RNase H	RNase_H
UHGV-0131923_13	COG	COG0328	Ribonuclease HI	NA
UHGV-0131923_13	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0131923_14	PHROG	phrog_7566	NA	unknown function
UHGV-0131923_14	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0131923_16	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0131923_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0131923_16	UniRef90	UniRef90_A0A356C6C6	DNA methylase N-4	NA
UHGV-0131923_16	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0131923_16	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0131923_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0131923_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0131923_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0131923_16	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0131923_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0131923_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0131923_17	UniRef90	UniRef90_A0A356C6K5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0131923_17	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0131923_17	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0131923_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0131923_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0131923_17	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0131923_19	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0131923_19	UniRef90	UniRef90_A0A3D5LSK2	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0131923_19	eggNOG-mapper	1123008.KB905702_gene2322	NA	NA
UHGV-0131923_19	Pfam	PF14359	NA	DUF4406
UHGV-0131923_19	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0131923_19	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0131923_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0131923_20	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0131923_20	Structural annotation	PF02996	NA	NA
UHGV-0131923_21	PHROG	phrog_10226	NA	unknown function
UHGV-0131923_21	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-0131923_21	Structural annotation	COG4127	NA	NA
UHGV-0131923_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0131923_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0131923_23	UniRef90	UniRef90_A0A356C6K0	Terminase small subunit	NA
UHGV-0131923_23	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-0131923_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0131923_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0131923_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0131923_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0131923_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0131923_24	UniRef90	UniRef90_A0A356C691	Terminase	NA
UHGV-0131923_24	eggNOG-mapper	1294142.CINTURNW_1023	Phage terminase, large subunit, PBSX family	NA
UHGV-0131923_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0131923_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0131923_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0131923_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0131923_25	UniRef90	UniRef90_A0A356C6G5	Capsid protein	NA
UHGV-0131923_25	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0131923_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0131923_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0131923_26	UniRef90	UniRef90_A0A3D2TWR6	Minor capsid protein	NA
UHGV-0131923_26	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0131923_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0131923_26	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0131923_26	Structural annotation	PF06152	NA	NA
UHGV-0131923_28	PHROG	phrog_872	NA	unknown function
UHGV-0131923_28	UniRef90	UniRef90_A0A413P9Z7	NA	NA
UHGV-0131923_28	eggNOG-mapper	573413.Spirs_2170	NA	NA
UHGV-0131923_28	Pfam	PF11195	NA	DUF2829
UHGV-0131923_28	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0131923_28	Structural annotation	PF11195	NA	NA
UHGV-0131923_29	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0131923_29	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0131923_29	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0131923_30	PHROG	phrog_422	major head protein	head and packaging
UHGV-0131923_30	UniRef90	UniRef90_A0A356C4N2	Capsid protein	NA
UHGV-0131923_30	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0131923_30	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0131923_31	PHROG	phrog_1378	NA	unknown function
UHGV-0131923_31	eggNOG-mapper	1391647.AVSV01000003_gene1809	NA	NA
UHGV-0131923_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0131923_32	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0131923_33	PHROG	phrog_8710	NA	unknown function
UHGV-0131923_33	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0131923_33	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0131923_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0131923_34	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0131923_34	Structural annotation	PF11114	NA	NA
UHGV-0131923_35	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0131923_35	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0131923_35	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0131923_35	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0131923_35	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0131923_36	PHROG	phrog_820	major tail protein	tail
UHGV-0131923_36	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0131923_36	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0131923_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0131923_37	PHROG	phrog_8300	NA	unknown function
UHGV-0131923_37	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0131923_37	Structural annotation	PF06896	NA	NA
UHGV-0131923_38	PHROG	phrog_8355	NA	unknown function
UHGV-0131923_38	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0131923_38	eggNOG-mapper	1415775.U729_2613	NA	NA
UHGV-0131923_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0131923_38	Structural annotation	PF06854	NA	NA
UHGV-0131923_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0131923_39	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0131923_39	eggNOG-mapper	679192.HMPREF9013_1293	tape measure	NA
UHGV-0131923_39	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0131923_39	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0131923_40	PHROG	phrog_1194	NA	unknown function
UHGV-0131923_40	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0131923_40	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0131923_41	PHROG	phrog_1401	NA	unknown function
UHGV-0131923_41	UniRef90	UniRef90_UPI00077668B1	NA	NA
UHGV-0131923_41	eggNOG-mapper	1391647.AVSV01000003_gene1820	NA	NA
UHGV-0131923_41	Structural annotation	PF07761	NA	NA
UHGV-0131923_42	PHROG	phrog_16267	NA	unknown function
UHGV-0131923_42	UniRef90	UniRef90_A0A356C4L7	Peptidase S74 domain-containing protein	NA
UHGV-0131923_42	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0131923_42	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0131923_42	COG	COG4926	Phage-related protein	NA
UHGV-0131923_42	Structural annotation	PF06605, PF20086, PF18099, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0131923_43	PHROG	phrog_199	holin	lysis
UHGV-0131923_43	UniRef90	UniRef90_A0A356C4Q2	Holin	NA
UHGV-0131923_43	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-0131923_43	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0131923_43	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0131923_43	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0131923_43	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0131923_44	KOfam	K07273	acm; lysozyme	NA
UHGV-0131923_44	PHROG	phrog_291	endolysin	lysis
UHGV-0131923_44	UniRef90	UniRef90_A0A356C4L5	LysM domain-containing protein	NA
UHGV-0131923_44	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0131923_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0131923_44	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0131923_44	Structural annotation	PF01183, NF007404, COG3757	NA	NA