UHGV-0131951

Genome information

vOTU vOTU-032006

Genome length 29,319 bps

CDS count 44

Completeness 69.01% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0131951
vOTU ID	vOTU-032006
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_380340
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.68
Jumbo phage	No

Genome content
Genome length	29,319 bps
GC content	46.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.84%
Average CDS length	632.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0131951_1	PHROG	phrog_33061	NA	unknown function
UHGV-0131951_1	eggNOG-mapper	411468.CLOSCI_01514	NA	NA
UHGV-0131951_1	Structural annotation	PF19087	NA	NA
UHGV-0131951_2	PHROG	phrog_14030	NA	unknown function
UHGV-0131951_2	UniRef90	UniRef90_A0A1Q6KNA3	SH3b domain-containing protein	NA
UHGV-0131951_2	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA
UHGV-0131951_2	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0131951_2	Structural annotation	PF14627	NA	NA
UHGV-0131951_3	PHROG	phrog_34409	NA	unknown function
UHGV-0131951_4	PHROG	phrog_36029	NA	unknown function
UHGV-0131951_4	UniRef90	UniRef90_A0A345BPS8	Holin of superfamily 6	NA
UHGV-0131951_4	eggNOG-mapper	742741.HMPREF9475_00444	NA	NA
UHGV-0131951_5	PHROG	phrog_33302	NA	unknown function
UHGV-0131951_5	eggNOG-mapper	742741.HMPREF9475_00443	NA	NA
UHGV-0131951_6	PHROG	phrog_1863	NA	unknown function
UHGV-0131951_6	eggNOG-mapper	742741.HMPREF9475_00442	NA	NA
UHGV-0131951_7	PHROG	phrog_29601	NA	unknown function
UHGV-0131951_7	eggNOG-mapper	411468.CLOSCI_01508	NA	NA
UHGV-0131951_8	PHROG	phrog_134	NA	unknown function
UHGV-0131951_8	UniRef90	UniRef90_A0A5S4VUR2	XkdX family protein	NA
UHGV-0131951_8	eggNOG-mapper	742741.HMPREF9475_00440	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0131951_8	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0131951_8	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0131951_8	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0131951_9	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0131951_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0131951_9	UniRef90	UniRef90_H7BVE9	Reverse transcriptase domain-containing protein	NA
UHGV-0131951_9	eggNOG-mapper	742741.HMPREF9475_00439	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0131951_9	PADLOC	drt-UG3	DRT	DRT
UHGV-0131951_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0131951_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0131951_9	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0131951_11	PHROG	phrog_5302	tail protein	tail
UHGV-0131951_11	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-0131951_11	Structural annotation	COG1262	NA	NA
UHGV-0131951_12	PHROG	phrog_38006	NA	unknown function
UHGV-0131951_12	eggNOG-mapper	742741.HMPREF9475_00437	NA	NA
UHGV-0131951_13	PHROG	phrog_31398	NA	unknown function
UHGV-0131951_13	UniRef90	UniRef90_B0NDH4	BppU_N domain-containing protein	NA
UHGV-0131951_13	eggNOG-mapper	742741.HMPREF9475_00436	NA	NA
UHGV-0131951_13	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0131951_13	Structural annotation	PF10651, NF033814, COG2372	NA	NA
UHGV-0131951_14	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0131951_14	PHROG	phrog_1794	amidase	lysis
UHGV-0131951_14	UniRef90	UniRef90_A0A1C5UFN2	Exo-glucosaminidase lytG	NA
UHGV-0131951_14	eggNOG-mapper	908340.HMPREF9406_0181	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0131951_14	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0131951_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0131951_14	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0131951_14	Structural annotation	PF01832, PF01510, PF08230, MF_04111, NF038016, NF008758, COG1705, COG3023	NA	NA
UHGV-0131951_15	PHROG	phrog_199	holin	lysis
UHGV-0131951_15	UniRef90	UniRef90_D7GQP7	Toxin secretion/phage lysis holin	NA
UHGV-0131951_15	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0131951_15	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0131951_15	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0131951_15	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0131951_15	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0131951_16	PHROG	phrog_134	NA	unknown function
UHGV-0131951_16	UniRef90	UniRef90_A0A414B032	XkdX family protein	NA
UHGV-0131951_16	eggNOG-mapper	1298920.KI911353_gene4834	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0131951_16	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0131951_16	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0131951_17	eggNOG-mapper	742733.HMPREF9469_05015	NA	NA
UHGV-0131951_18	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0131951_18	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0131951_18	UniRef90	UniRef90_D7GQP5	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0131951_18	eggNOG-mapper	665950.HMPREF1025_01556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0131951_18	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0131951_18	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0131951_18	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0131951_18	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0131951_19	eggNOG-mapper	1235802.C823_01101	NA	NA
UHGV-0131951_19	Structural annotation	PF05635, NF008912	NA	NA
UHGV-0131951_20	UniRef90	UniRef90_A0A1C6L0B1	NA	NA
UHGV-0131951_20	eggNOG-mapper	1321782.HMPREF1986_02279	COG NOG18825 non supervised orthologous group	NA
UHGV-0131951_20	Pfam	PF19789	NA	DUF6273
UHGV-0131951_21	PHROG	phrog_25620	tail collar fiber protein	tail
UHGV-0131951_21	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0131951_22	PHROG	phrog_18725	NA	unknown function
UHGV-0131951_22	eggNOG-mapper	1235800.C819_00473	NA	NA
UHGV-0131951_23	PHROG	phrog_13879	NA	unknown function
UHGV-0131951_23	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-0131951_23	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0131951_24	PHROG	phrog_1194	NA	unknown function
UHGV-0131951_24	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0131951_24	Pfam	PF20458	NA	DUF6711
UHGV-0131951_24	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0131951_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0131951_25	UniRef90	UniRef90_A0A1C5UFA5	Phage-related protein	NA
UHGV-0131951_25	eggNOG-mapper	1123263.AUKY01000015_gene1620	Phage tail tape measure protein TP901	NA
UHGV-0131951_25	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0131951_26	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0131951_27	UniRef90	UniRef90_UPI0018A0054C	NA	NA
UHGV-0131951_27	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0131951_27	Pfam	PF16478	NA	DUF5055
UHGV-0131951_27	Structural annotation	PF16478	NA	NA
UHGV-0131951_28	PHROG	phrog_158	major tail protein	tail
UHGV-0131951_28	UniRef90	UniRef90_D7GQN5	Phage tail protein	NA
UHGV-0131951_28	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0131951_28	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0131951_28	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0131951_29	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0131951_30	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0131951_31	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0131951_32	UniRef90	UniRef90_D7GQN2	Phage QLRG family, putative DNA packaging	NA
UHGV-0131951_32	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0131951_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0131951_32	Structural annotation	TIGR01560	NA	NA
UHGV-0131951_33	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0131951_33	UniRef90	UniRef90_UPI00189F9709	NA	NA
UHGV-0131951_33	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0131951_33	Pfam	PF17236	NA	DUF5309
UHGV-0131951_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0131951_34	UniRef90	UniRef90_B0NDG6	Phage protein, HK97 gp10 family	NA
UHGV-0131951_34	eggNOG-mapper	411468.CLOSCI_01494	Phage protein, HK97 gp10 family	NA
UHGV-0131951_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0131951_34	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0131951_35	PHROG	phrog_25	head closure Hc1	connector
UHGV-0131951_35	UniRef90	UniRef90_A0A412Q2M1	Phage head-tail joining protein	NA
UHGV-0131951_35	eggNOG-mapper	742741.HMPREF9475_00427	Phage head-tail joining protein	NA
UHGV-0131951_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0131951_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0131951_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0131951_36	UniRef90	UniRef90_A0A412Q2I2	Phage gp6-like head-tail connector protein	NA
UHGV-0131951_36	eggNOG-mapper	411468.CLOSCI_01492	NA	NA
UHGV-0131951_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0131951_40	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0131951_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0131951_40	UniRef90	UniRef90_A0A174KPI4	Antitoxin PezA	NA
UHGV-0131951_40	eggNOG-mapper	742741.HMPREF9475_00400	Helix-turn-helix XRE-family like proteins	NA
UHGV-0131951_40	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0131951_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0131951_40	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0131951_41	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0131951_41	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0131951_41	UniRef90	UniRef90_A0A174KVM8	Conjugal transfer protein TrbA	NA
UHGV-0131951_41	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0131951_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0131951_41	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0131951_42	PHROG	phrog_10934	NA	unknown function
UHGV-0131951_42	UniRef90	UniRef90_R6FYE5	Gp2	NA
UHGV-0131951_42	eggNOG-mapper	1187894.I2E8X0_9CAUD	NA	NA
UHGV-0131951_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0131951_43	PHROG	phrog_95	integrase	integration and excision
UHGV-0131951_43	UniRef90	UniRef90_A0A373SA36	Recombinase family protein	NA
UHGV-0131951_43	eggNOG-mapper	673832.D2IYS3_9CAUD	Recombinase	NA
UHGV-0131951_43	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0131951_43	Pfam	PF07508	Recombinase	Recombinase
UHGV-0131951_43	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0131951_43	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0131951_44	KOfam	K02003	ABC.CD.A; putative ABC transport system ATP-binding protein	NA
UHGV-0131951_44	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0131951_44	UniRef90	UniRef90_A0A1C6BY23	Macrolide export ATP-binding/permease protein MacB	NA
UHGV-0131951_44	eggNOG-mapper	1235798.C817_04312	ABC transporter	NA
UHGV-0131951_44	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0131951_44	COG	COG1136	ABC-type lipoprotein export system, ATPase component	NA
UHGV-0131951_44	Structural annotation	PF00005, MF_01005, NF008639, COG1136	NA	NA