UHGV-0132055

Genome information

Genome length 41,255 bps

CDS count 66

Completeness 86.34% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132055
vOTU ID	vOTU-023402
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_381389
BioSample	SAMN04158616
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.75
Jumbo phage	No

Genome content
Genome length	41,255 bps
GC content	50.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.57%
Average CDS length	565.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132055_1	PHROG	phrog_937	hemolysin	other
UHGV-0132055_1	eggNOG-mapper	1235835.C814_01939	NA	NA
UHGV-0132055_2	PHROG	phrog_13589	NA	unknown function
UHGV-0132055_2	UniRef90	UniRef90_UPI0011582918	fibronectin type III domain-containing protein	NA
UHGV-0132055_2	eggNOG-mapper	1298920.KI911353_gene4836	ATPase involved in DNA repair	NA
UHGV-0132055_2	Pfam	PF16656	Purple acid Phosphatase, N-terminal domain	Pur_ac_phosph_N
UHGV-0132055_2	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0132055_3	eggNOG-mapper	610130.Closa_0858	NA	NA
UHGV-0132055_4	PHROG	phrog_1780	tail collar fiber protein	tail
UHGV-0132055_4	UniRef90	UniRef90_UPI001C00B4AD	phage tail protein	NA
UHGV-0132055_4	eggNOG-mapper	610130.Closa_0857	Phage tail-collar fibre protein	NA
UHGV-0132055_4	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0132055_4	Structural annotation	PF12571	NA	NA
UHGV-0132055_5	PHROG	phrog_48	tail protein	tail
UHGV-0132055_5	UniRef90	UniRef90_UPI001C0396F5	phage tail protein	NA
UHGV-0132055_5	eggNOG-mapper	610130.Closa_0856	Phage tail protein (Tail_P2_I)	NA
UHGV-0132055_5	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0132055_5	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0132055_5	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0132055_6	PHROG	phrog_6	baseplate protein	tail
UHGV-0132055_6	UniRef90	UniRef90_UPI001C018DAF	baseplate J/gp47 family protein	NA
UHGV-0132055_6	eggNOG-mapper	610130.Closa_0855	baseplate J-like protein	NA
UHGV-0132055_6	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0132055_6	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0132055_6	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0132055_7	UniRef90	UniRef90_A0A7X5ICD6	GPW_gp25 domain-containing protein	NA
UHGV-0132055_7	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0132055_8	KOfam	K06906	NA	NA
UHGV-0132055_8	PHROG	phrog_76	tail protein	tail
UHGV-0132055_8	UniRef90	UniRef90_UPI001C0230D8	phage tail protein	NA
UHGV-0132055_8	eggNOG-mapper	693746.OBV_22760	Phage P2 GpU	NA
UHGV-0132055_8	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0132055_8	COG	COG3499	NA	NA
UHGV-0132055_8	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0132055_9	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0132055_9	UniRef90	UniRef90_UPI00130DE139	phage baseplate protein	NA
UHGV-0132055_9	eggNOG-mapper	610130.Closa_0852	Baseplate assembly protein	NA
UHGV-0132055_9	Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	Phage_base_V
UHGV-0132055_9	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0132055_9	Structural annotation	PF01176, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0132055_10	KOfam	K06905	NA	NA
UHGV-0132055_10	PHROG	phrog_52	tail protein	tail
UHGV-0132055_10	UniRef90	UniRef90_D6DIU9	Phage protein D	NA
UHGV-0132055_10	eggNOG-mapper	1235835.C814_01193	COG3500 Phage protein D	NA
UHGV-0132055_10	COG	COG3500	NA	NA
UHGV-0132055_10	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0132055_11	PHROG	phrog_46	tail protein	tail
UHGV-0132055_11	UniRef90	UniRef90_UPI00130D9072	tail protein X	NA
UHGV-0132055_11	eggNOG-mapper	665942.HMPREF1022_01533	Phage Tail Protein X	NA
UHGV-0132055_11	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0132055_11	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0132055_11	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0132055_12	PHROG	phrog_19074	NA	unknown function
UHGV-0132055_12	UniRef90	UniRef90_UPI001C017EA0	phage tail tape measure protein	NA
UHGV-0132055_12	eggNOG-mapper	536233.CLO_0896	tail tape measure protein	NA
UHGV-0132055_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0132055_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0132055_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0132055_12	Structural annotation	PF10145, PF12026, TIGR01760, COG5280	NA	NA
UHGV-0132055_13	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0132055_13	UniRef90	UniRef90_UPI001C022043	phage tail assembly protein	NA
UHGV-0132055_13	eggNOG-mapper	478749.BRYFOR_07546	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0132055_13	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0132055_13	Structural annotation	PF10109	NA	NA
UHGV-0132055_14	KOfam	K06908	NA	NA
UHGV-0132055_14	PHROG	phrog_55	head closure	connector
UHGV-0132055_14	UniRef90	UniRef90_UPI00130E5289	phage major tail tube protein	NA
UHGV-0132055_14	eggNOG-mapper	610130.Closa_0847	Phage tail tube protein FII	NA
UHGV-0132055_14	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0132055_14	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0132055_14	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0132055_15	KOfam	K06907	NA	NA
UHGV-0132055_15	PHROG	phrog_23	tail sheath	tail
UHGV-0132055_15	UniRef90	UniRef90_UPI001C00D801	phage tail sheath family protein	NA
UHGV-0132055_15	eggNOG-mapper	610130.Closa_0846	COG3497 Phage tail sheath protein FI	NA
UHGV-0132055_15	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0132055_15	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0132055_16	PHROG	phrog_17039	NA	unknown function
UHGV-0132055_16	eggNOG-mapper	610130.Closa_0845	NA	NA
UHGV-0132055_17	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0132055_17	Structural annotation	PF08873	NA	NA
UHGV-0132055_18	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0132055_18	Structural annotation	PF06763	NA	NA
UHGV-0132055_19	PHROG	phrog_2551	minor tail protein	tail
UHGV-0132055_19	UniRef90	UniRef90_A0A318EKR9	ATP-binding sugar transporter Gifsy-2	NA
UHGV-0132055_19	eggNOG-mapper	97139.C824_03377	ATP-binding sugar transporter from pro-phage	NA
UHGV-0132055_19	Structural annotation	PF05354, TIGR01563	NA	NA
UHGV-0132055_20	PHROG	phrog_122	head decoration	head and packaging
UHGV-0132055_20	UniRef90	UniRef90_UPI00130EC680	NA	NA
UHGV-0132055_20	eggNOG-mapper	1415774.U728_501	NA	NA
UHGV-0132055_20	Pfam	PF09956	NA	DUF2190
UHGV-0132055_20	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0132055_20	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0132055_21	PHROG	phrog_133	head maturation protease	head and packaging
UHGV-0132055_21	UniRef90	UniRef90_A0A7X2NKL2	Mu-like_gpT domain-containing protein	NA
UHGV-0132055_21	eggNOG-mapper	97139.C824_03380	serine-type endopeptidase activity	NA
UHGV-0132055_21	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0132055_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0132055_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0132055_23	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0132055_23	UniRef90	UniRef90_UPI001C017F2F	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0132055_23	eggNOG-mapper	1235799.C818_01933	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0132055_23	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0132055_23	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0132055_23	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0132055_24	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0132055_24	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0132055_24	UniRef90	UniRef90_A0A414J4J8	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0132055_24	eggNOG-mapper	665956.HMPREF1032_00122	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0132055_24	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0132055_24	Structural annotation	PF07927	NA	NA
UHGV-0132055_25	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0132055_25	UniRef90	UniRef90_UPI001C021ABB	HK97 family phage prohead protease	NA
UHGV-0132055_25	eggNOG-mapper	887325.HMPREF0381_0385	Caudovirus prohead serine protease	NA
UHGV-0132055_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0132055_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0132055_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0132055_26	PHROG	phrog_21	portal protein	head and packaging
UHGV-0132055_26	UniRef90	UniRef90_UPI001C035E9A	phage portal protein	NA
UHGV-0132055_26	eggNOG-mapper	887325.HMPREF0381_0384	Phage portal protein, lambda family	NA
UHGV-0132055_26	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0132055_26	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0132055_26	COG	COG5511	Phage capsid protein	NA
UHGV-0132055_26	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0132055_27	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0132055_27	UniRef90	UniRef90_UPI001C02F4B0	peptidylprolyl isomerase	NA
UHGV-0132055_27	eggNOG-mapper	887325.HMPREF0381_0383	NA	NA
UHGV-0132055_27	Structural annotation	PF19645	NA	NA
UHGV-0132055_28	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0132055_28	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0132055_28	UniRef90	UniRef90_UPI001C00F873	phage terminase large subunit family protein	NA
UHGV-0132055_28	eggNOG-mapper	1415774.U728_496	Phage terminase large subunit (GpA)	NA
UHGV-0132055_28	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0132055_28	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0132055_28	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0132055_28	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0132055_29	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0132055_29	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0132055_29	UniRef90	UniRef90_UPI001C01D246	DNA-packaging protein	NA
UHGV-0132055_29	eggNOG-mapper	1415774.U728_495	NA	NA
UHGV-0132055_29	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0132055_29	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0132055_30	UniRef90	UniRef90_UPI00130E6CB1	chemotaxis protein	NA
UHGV-0132055_30	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0132055_30	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0132055_33	PHROG	phrog_5763	NA	unknown function
UHGV-0132055_33	eggNOG-mapper	742740.HMPREF9474_04284	NA	NA
UHGV-0132055_35	PHROG	phrog_1281	NA	unknown function
UHGV-0132055_35	UniRef90	UniRef90_A0A3R6VDX0	NA	NA
UHGV-0132055_35	eggNOG-mapper	1508644.SFBmNL_01513	NA	NA
UHGV-0132055_35	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0132055_35	COG	COG3600	NA	NA
UHGV-0132055_35	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0132055_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0132055_36	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0132055_36	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0132055_36	Structural annotation	PF04545	NA	NA
UHGV-0132055_37	PHROG	phrog_6568	NA	unknown function
UHGV-0132055_38	PHROG	phrog_23707	NA	unknown function
UHGV-0132055_38	UniRef90	UniRef90_A0A7G5MVV3	Alanine racemase	NA
UHGV-0132055_38	eggNOG-mapper	537007.BLAHAN_04222	NA	NA
UHGV-0132055_39	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0132055_40	PHROG	phrog_18716	NA	unknown function
UHGV-0132055_40	UniRef90	UniRef90_R6RP50	NA	NA
UHGV-0132055_40	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0132055_40	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0132055_40	Structural annotation	PF18909	NA	NA
UHGV-0132055_41	UniRef90	UniRef90_R6SKK0	(ABCB) permease/ATP-binding protein efflux ABC transporter heavy metal transporter family	NA
UHGV-0132055_42	PHROG	phrog_15077	NA	unknown function
UHGV-0132055_42	eggNOG-mapper	1235800.C819_02581	NA	NA
UHGV-0132055_42	Structural annotation	NF038070	NA	NA
UHGV-0132055_44	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0132055_44	UniRef90	UniRef90_UPI001C013BAD	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0132055_44	eggNOG-mapper	1232452.BAIB02000006_gene1468	Belongs to the sigma-70 factor family	NA
UHGV-0132055_44	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0132055_44	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0132055_44	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-0132055_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0132055_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0132055_46	UniRef90	UniRef90_UPI001C0287E2	single-stranded DNA-binding protein	NA
UHGV-0132055_46	eggNOG-mapper	457421.CBFG_04823	Single-strand binding protein family	NA
UHGV-0132055_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0132055_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0132055_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0132055_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0132055_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0132055_47	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0132055_47	UniRef90	UniRef90_UPI001C02672A	phage/plasmid primase, P4 family	NA
UHGV-0132055_47	eggNOG-mapper	478749.BRYFOR_09102	Phage plasmid primase, P4 family	NA
UHGV-0132055_47	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0132055_47	Pfam	PF19263	NA	DUF5906
UHGV-0132055_47	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0132055_47	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0132055_47	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0132055_47	Structural annotation	PF02257, PF05272, PF08706, MF_01407, NF011296, COG3378	NA	NA
UHGV-0132055_48	PHROG	phrog_398	NA	unknown function
UHGV-0132055_48	UniRef90	UniRef90_UPI001C01AC37	putative HNHc nuclease	NA
UHGV-0132055_48	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0132055_48	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0132055_48	Structural annotation	PF16784	NA	NA
UHGV-0132055_57	Structural annotation	PF20385, NF040556	NA	NA
UHGV-0132055_61	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0132055_61	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0132055_61	UniRef90	UniRef90_A0A3R6HP21	XRE family transcriptional regulator	NA
UHGV-0132055_61	eggNOG-mapper	1120978.KB894087_gene408	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0132055_61	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0132055_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132055_61	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0132055_62	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0132055_62	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0132055_62	UniRef90	UniRef90_UPI0019156B30	XRE family transcriptional regulator	NA
UHGV-0132055_62	eggNOG-mapper	706434.HMPREF9429_00405	Peptidase S24-like	NA
UHGV-0132055_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132055_62	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0132055_62	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0132055_62	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0132055_63	UniRef90	UniRef90_A0A7U5GYX4	SWIM-type domain-containing protein	NA
UHGV-0132055_63	eggNOG-mapper	525254.HMPREF0072_1328	Swim zinc finger domain protein	NA
UHGV-0132055_63	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-0132055_64	UniRef90	UniRef90_UPI00046546BB	NA	NA
UHGV-0132055_64	eggNOG-mapper	1232447.BAHW02000027_gene1847	NA	NA
UHGV-0132055_64	Pfam	PF10387	NA	DUF2442
UHGV-0132055_64	Structural annotation	PF10387	NA	NA
UHGV-0132055_65	PHROG	phrog_87	metallo-protease	other
UHGV-0132055_65	UniRef90	UniRef90_R5FIM6	Pathogenicity island protein	NA
UHGV-0132055_65	eggNOG-mapper	1235790.C805_00591	Zn peptidase	NA
UHGV-0132055_65	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0132055_65	Structural annotation	PF06114, COG2856	NA	NA