UHGV-0132125

Genome information

Genome length 39,286 bps

CDS count 55

Completeness 86.55% (medium-quality)

geNomad score 0.9604

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132125
vOTU ID	vOTU-018038
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_349573
BioSample	SAMN02333929
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9604
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.23
Jumbo phage	No

Genome content
Genome length	39,286 bps
GC content	35.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.10%
Average CDS length	661.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132125_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0132125_2	UniRef90	UniRef90_UPI001C3D077D	terminase large subunit	NA
UHGV-0132125_2	eggNOG-mapper	1073999.BN137_1180	terminase	NA
UHGV-0132125_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0132125_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0132125_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0132125_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0132125_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0132125_3	UniRef90	UniRef90_UPI0013D66B31	phage portal protein	NA
UHGV-0132125_3	eggNOG-mapper	1121940.AUDZ01000007_gene2197	Phage portal protein	NA
UHGV-0132125_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0132125_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0132125_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0132125_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0132125_4	KOfam	K06904	NA	NA
UHGV-0132125_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0132125_4	UniRef90	UniRef90_UPI0013D17C03	HK97 family phage prohead protease	NA
UHGV-0132125_4	eggNOG-mapper	279238.Saro_0648	Caudovirus prohead serine protease	NA
UHGV-0132125_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0132125_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0132125_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0132125_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0132125_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0132125_5	UniRef90	UniRef90_R9AWY5	HK97 family phage major capsid protein	NA
UHGV-0132125_5	eggNOG-mapper	202954.BBNK01000044_gene107	capsid protein	NA
UHGV-0132125_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0132125_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0132125_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0132125_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0132125_6	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0132125_6	UniRef90	UniRef90_UPI0013D4602C	head-tail connector protein	NA
UHGV-0132125_6	eggNOG-mapper	1027273.GZ77_20495	Phage gp6-like head-tail connector protein	NA
UHGV-0132125_6	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0132125_6	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0132125_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0132125_7	PHROG	phrog_25	head closure Hc1	connector
UHGV-0132125_7	UniRef90	UniRef90_A0A662ZJS3	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0132125_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0132125_10	PHROG	phrog_158	major tail protein	tail
UHGV-0132125_10	UniRef90	UniRef90_A0A662ZJ77	Phage tail tube protein family protein	NA
UHGV-0132125_10	eggNOG-mapper	1265507.KB899636_gene1664	Phage tail tube protein family	NA
UHGV-0132125_10	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0132125_10	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0132125_13	PHROG	phrog_1538	tail length tape measure protein	tail
UHGV-0132125_13	eggNOG-mapper	1200567.JNKD01000011_gene681	Mu-like prophage protein	NA
UHGV-0132125_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0132125_13	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0132125_14	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0132125_14	eggNOG-mapper	1200567.JNKD01000011_gene682	NA	NA
UHGV-0132125_15	PHROG	phrog_396	minor tail protein	tail
UHGV-0132125_15	eggNOG-mapper	160488.PP_1578	NA	NA
UHGV-0132125_15	Pfam	PF08875	NA	DUF1833
UHGV-0132125_16	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0132125_16	PHROG	phrog_329	minor tail protein	tail
UHGV-0132125_16	UniRef90	UniRef90_UPI00068AB9E9	NlpC/P60 family protein	NA
UHGV-0132125_16	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0132125_17	PHROG	phrog_469	tail protein	tail
UHGV-0132125_17	eggNOG-mapper	1200567.JNKD01000011_gene685	cellulase activity	NA
UHGV-0132125_17	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0132125_17	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0132125_17	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0132125_18	PHROG	phrog_5004	NA	unknown function
UHGV-0132125_19	PHROG	phrog_1171	tail spike protein	tail
UHGV-0132125_19	eggNOG-mapper	935837.JAEK01000054_gene1473	NA	NA
UHGV-0132125_19	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0132125_20	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0132125_21	PHROG	phrog_9288	NA	unknown function
UHGV-0132125_21	eggNOG-mapper	1315956.M9QT57_9CAUD	NA	NA
UHGV-0132125_22	PHROG	phrog_8329	NA	unknown function
UHGV-0132125_26	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0132125_26	UniRef90	UniRef90_A0A345N236	RecT protein	NA
UHGV-0132125_26	eggNOG-mapper	1089439.KB902270_gene2623	NA	NA
UHGV-0132125_26	Pfam	PF03837	RecT family	RecT
UHGV-0132125_27	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132125_27	UniRef90	UniRef90_A0A2X0VDL9	Putative phage-type endonuclease	NA
UHGV-0132125_27	eggNOG-mapper	1217710.F969_02563	YqaJ-like viral recombinase domain	NA
UHGV-0132125_27	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0132125_27	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0132125_27	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0132125_30	PHROG	phrog_10105	NA	unknown function
UHGV-0132125_36	Structural annotation	PF18358, NF037951	NA	NA
UHGV-0132125_37	PHROG	phrog_14626	NA	unknown function
UHGV-0132125_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0132125_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0132125_38	UniRef90	UniRef90_UPI000DE4F8FA	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0132125_38	eggNOG-mapper	1391647.AVSV01000003_gene1798	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0132125_38	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0132125_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0132125_38	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0132125_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0132125_38	Structural annotation	PF13679, MF_00607, TIGR03587, COG0742	NA	NA
UHGV-0132125_39	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0132125_39	PHROG	phrog_17284	NA	unknown function
UHGV-0132125_39	UniRef90	UniRef90_A0A379CK09	Cytosine-specific methyltransferase	NA
UHGV-0132125_39	eggNOG-mapper	996306.SSUR61_1005	C-5 cytosine-specific DNA methylase	NA
UHGV-0132125_39	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0132125_39	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0132125_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0132125_43	eggNOG-mapper	476272.RUMHYD_01917	NA	NA
UHGV-0132125_45	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0132125_45	eggNOG-mapper	552396.HMPREF0863_02432	NA	NA
UHGV-0132125_45	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0132125_46	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132125_46	UniRef90	UniRef90_A0A0X3Y374	HNHc domain-containing protein	NA
UHGV-0132125_46	eggNOG-mapper	546275.FUSPEROL_02054	HNH endonuclease	NA
UHGV-0132125_46	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0132125_46	Structural annotation	PF13392, PF13276	NA	NA
UHGV-0132125_47	PHROG	phrog_31911	NA	unknown function
UHGV-0132125_47	eggNOG-mapper	1273103.NM10_03231	NA	NA
UHGV-0132125_49	Pfam	PF20987	Intron-encoded endonuclease 1, DNA-binding domain	I-TevI_DNA-bd
UHGV-0132125_50	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132125_51	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0132125_51	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0132125_51	UniRef90	UniRef90_A0A0F9C1N8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0132125_51	eggNOG-mapper	228399.appser1_5590	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0132125_51	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0132125_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0132125_51	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0132125_52	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0132125_52	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0132125_52	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-0132125_53	PHROG	phrog_4928	NA	unknown function
UHGV-0132125_53	UniRef90	UniRef90_C6XE81	Lytic transglycosylase catalytic	NA
UHGV-0132125_53	eggNOG-mapper	582744.Msip34_1611	lytic transglycosylase activity	NA
UHGV-0132125_53	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0132125_53	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0132125_53	Structural annotation	PF19489, MF_01381, NF011856, COG0741	NA	NA
UHGV-0132125_55	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0132125_55	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132125_55	UniRef90	UniRef90_A0A349LVQ1	HNH endonuclease	NA
UHGV-0132125_55	eggNOG-mapper	1217656.F964_00548	HNH nucleases	NA
UHGV-0132125_55	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0132125_55	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA