UHGV-0132252

Genome information

Genome length 40,995 bps

CDS count 70

Completeness 97.05% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132252
vOTU ID	vOTU-013413
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_366731
BioSample	SAMN03283276
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.05% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.72
Jumbo phage	No

Genome content
Genome length	40,995 bps
GC content	54.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	89.23%
Average CDS length	526.16 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132252_1	Structural annotation	PF16509, TIGR03209, COG2739	NA	NA
UHGV-0132252_2	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0132252_2	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0132252_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132252_2	COG	COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	NA
UHGV-0132252_2	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0132252_4	PHROG	phrog_3754	NA	unknown function
UHGV-0132252_4	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0132252_5	PHROG	phrog_21718	NA	unknown function
UHGV-0132252_5	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0132252_6	PHROG	phrog_22984	NA	unknown function
UHGV-0132252_7	PHROG	phrog_16490	NA	unknown function
UHGV-0132252_7	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0132252_8	PHROG	phrog_20016	NA	unknown function
UHGV-0132252_8	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0132252_8	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0132252_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0132252_9	Structural annotation	PF12510	NA	NA
UHGV-0132252_11	KOfam	K14059	int; integrase	NA
UHGV-0132252_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0132252_11	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0132252_11	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0132252_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0132252_11	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0132252_11	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0132252_12	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0132252_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132252_12	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0132252_15	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0132252_15	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-0132252_15	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0132252_15	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0132252_15	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0132252_15	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0132252_15	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0132252_18	Pfam	PF09106	Elongation factor SelB, winged helix	SelB-wing_2
UHGV-0132252_18	Structural annotation	PF09202, MF_01819, NF041230, COG1321	NA	NA
UHGV-0132252_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0132252_19	UniRef90	UniRef90_UPI001966F1BB	helix-turn-helix transcriptional regulator	NA
UHGV-0132252_19	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0132252_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132252_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0132252_19	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0132252_20	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-0132252_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132252_20	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0132252_21	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0132252_21	UniRef90	UniRef90_UPI00137B411D	ORF6C domain-containing protein	NA
UHGV-0132252_21	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0132252_21	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0132252_21	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0132252_21	COG	COG3617	Prophage antirepressor	NA
UHGV-0132252_21	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0132252_22	PHROG	phrog_4433	NA	unknown function
UHGV-0132252_22	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0132252_22	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0132252_22	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0132252_23	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0132252_27	Structural annotation	PF06718	NA	NA
UHGV-0132252_29	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132252_29	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0132252_29	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0132252_29	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0132252_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0132252_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0132252_30	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0132252_30	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0132252_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0132252_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0132252_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0132252_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0132252_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0132252_31	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0132252_31	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0132252_31	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0132252_31	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-0132252_31	Pfam	PF19808	NA	DUF6291
UHGV-0132252_31	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0132252_31	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0132252_31	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0132252_32	Structural annotation	PF11417	NA	NA
UHGV-0132252_33	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0132252_34	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0132252_34	UniRef90	UniRef90_UPI00130E351D	adenine methyltransferase	NA
UHGV-0132252_34	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0132252_34	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0132252_34	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0132252_34	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0132252_36	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0132252_36	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0132252_36	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0132252_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0132252_36	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0132252_37	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0132252_37	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0132252_38	PHROG	phrog_3136	NA	unknown function
UHGV-0132252_38	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0132252_38	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0132252_38	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0132252_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0132252_39	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0132252_39	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0132252_39	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0132252_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0132252_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0132252_39	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0132252_40	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0132252_40	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0132252_40	UniRef90	UniRef90_A0A329TJ90	DNA methyltransferase	NA
UHGV-0132252_40	eggNOG-mapper	1235792.C808_02259	MT-A70	NA
UHGV-0132252_40	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0132252_40	Pfam	PF05063	MT-A70	MT-A70
UHGV-0132252_40	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0132252_40	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0132252_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0132252_41	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0132252_43	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0132252_43	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-0132252_43	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0132252_43	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0132252_43	Structural annotation	PF16677	NA	NA
UHGV-0132252_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0132252_44	PHROG	phrog_10250	NA	unknown function
UHGV-0132252_44	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0132252_44	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0132252_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0132252_44	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0132252_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0132252_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0132252_44	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0132252_45	PHROG	phrog_64	portal protein	head and packaging
UHGV-0132252_45	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0132252_45	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0132252_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0132252_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0132252_46	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0132252_46	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0132252_46	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0132252_46	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0132252_46	COG	COG2369	NA	NA
UHGV-0132252_46	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0132252_47	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0132252_47	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0132252_47	UniRef90	UniRef90_UPI001D0E8318	helix-turn-helix transcriptional regulator	NA
UHGV-0132252_47	eggNOG-mapper	1117108.PAALTS15_13457	Transcriptional regulator	NA
UHGV-0132252_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0132252_47	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0132252_47	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0132252_48	Structural annotation	PF07342	NA	NA
UHGV-0132252_49	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0132252_49	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0132252_49	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0132252_49	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0132252_49	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0132252_49	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0132252_49	COG	COG3617	Prophage antirepressor	NA
UHGV-0132252_49	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0132252_50	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0132252_50	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0132252_50	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0132252_50	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0132252_50	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0132252_52	Structural annotation	PF06810	NA	NA
UHGV-0132252_53	PHROG	phrog_247	major head protein	head and packaging
UHGV-0132252_53	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0132252_53	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0132252_53	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0132252_55	PHROG	phrog_17977	NA	unknown function
UHGV-0132252_55	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0132252_55	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0132252_56	Structural annotation	PF13554	NA	NA
UHGV-0132252_57	PHROG	phrog_885	major tail protein	tail
UHGV-0132252_57	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0132252_57	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0132252_60	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0132252_60	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0132252_60	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0132252_60	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0132252_60	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0132252_60	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0132252_60	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0132252_61	PHROG	phrog_3558	tail protein	tail
UHGV-0132252_61	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0132252_61	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-0132252_61	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0132252_61	COG	COG4926	Phage-related protein	NA
UHGV-0132252_61	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0132252_62	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0132252_62	COG	COG4722	Phage-related protein YomH	NA
UHGV-0132252_62	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0132252_64	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0132252_64	UniRef90	UniRef90_A0A2J4JSE0	NA	NA
UHGV-0132252_64	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0132252_64	Pfam	PF19789	NA	DUF6273
UHGV-0132252_64	Structural annotation	PF19789, PF18911	NA	NA
UHGV-0132252_66	UniRef90	UniRef90_UPI001D07AB37	XkdX family protein	NA
UHGV-0132252_66	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0132252_66	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0132252_66	Structural annotation	PF09693	NA	NA
UHGV-0132252_67	KOfam	K07273	acm; lysozyme	NA
UHGV-0132252_67	PHROG	phrog_291	endolysin	lysis
UHGV-0132252_67	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0132252_67	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0132252_67	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0132252_67	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0132252_67	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0132252_69	PHROG	phrog_15303	NA	unknown function
UHGV-0132252_70	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA