UHGV-0132304

Genome information

Genome length 30,089 bps

CDS count 50

Completeness 84.00% (medium-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132304
vOTU ID	vOTU-034075
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_368153
BioSample	SAMN03283290
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.94
Jumbo phage	No

Genome content
Genome length	30,089 bps
GC content	47.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.71%
Average CDS length	562.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132304_1	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0132304_1	UniRef90	UniRef90_A0A1C6GCR8	Phage N-6-adenine-methyltransferase	NA
UHGV-0132304_1	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0132304_1	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0132304_1	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0132304_1	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0132304_3	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0132304_3	UniRef90	UniRef90_A0A1Y0VNH5	Phg_2220_C domain-containing protein	NA
UHGV-0132304_3	eggNOG-mapper	278197.PEPE_1019	DnaD domain protein	NA
UHGV-0132304_3	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0132304_3	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0132304_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0132304_5	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0132304_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0132304_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0132304_12	UniRef90	UniRef90_A0A374EB41	XRE family transcriptional regulator	NA
UHGV-0132304_12	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0132304_12	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0132304_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0132304_12	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0132304_13	eggNOG-mapper	795955.AFRW01000079_gene238	TM2 domain	NA
UHGV-0132304_13	COG	COG2314	NA	NA
UHGV-0132304_16	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0132304_16	PHROG	phrog_29047	NA	unknown function
UHGV-0132304_16	UniRef90	UniRef90_J9G4U5	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-0132304_16	eggNOG-mapper	537013.CLOSTMETH_01694	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0132304_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132304_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0132304_18	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0132304_18	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0132304_18	eggNOG-mapper	1508644.SFBmNL_01554	NA	NA
UHGV-0132304_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132304_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0132304_20	Structural annotation	PF13560, MF_00535, NF041677, COG1396	NA	NA
UHGV-0132304_21	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0132304_21	PHROG	phrog_95	integrase	integration and excision
UHGV-0132304_21	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-0132304_21	eggNOG-mapper	1235835.C814_03413	Resolvase, N terminal domain	NA
UHGV-0132304_21	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0132304_21	Pfam	PF07508	Recombinase	Recombinase
UHGV-0132304_21	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0132304_21	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0132304_21	Structural annotation	PF00239, PF07508, PF19962, NF041201, COG1961	NA	NA
UHGV-0132304_22	eggNOG-mapper	445972.ANACOL_01884	NA	NA
UHGV-0132304_24	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0132304_26	Pfam	PF07374	NA	DUF1492
UHGV-0132304_26	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0132304_27	eggNOG-mapper	1121334.KB911071_gene1966	NA	NA
UHGV-0132304_28	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0132304_28	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0132304_28	UniRef90	UniRef90_A0A8A2VU94	M23 family metallopeptidase	NA
UHGV-0132304_28	eggNOG-mapper	665956.HMPREF1032_00102	heme binding	NA
UHGV-0132304_28	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0132304_28	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0132304_28	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0132304_28	Structural annotation	PF01551, MF_00664, NF040883, COG0739	NA	NA
UHGV-0132304_29	PHROG	phrog_4105	NA	unknown function
UHGV-0132304_29	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-0132304_32	PHROG	phrog_38190	NA	unknown function
UHGV-0132304_32	eggNOG-mapper	762211.BSTEL_0610	NA	NA
UHGV-0132304_35	PHROG	phrog_26795	NA	unknown function
UHGV-0132304_35	eggNOG-mapper	1273742.M1IQS1_9CAUD	NA	NA
UHGV-0132304_35	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0132304_37	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0132304_37	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0132304_37	eggNOG-mapper	498761.HM1_2873	nuclear chromosome segregation	NA
UHGV-0132304_37	COG	COG5283	Phage-related tail protein	NA
UHGV-0132304_39	Structural annotation	PF16478	NA	NA
UHGV-0132304_40	PHROG	phrog_88	major tail protein	tail
UHGV-0132304_40	UniRef90	UniRef90_UPI00189BD00F	Ig-like domain-containing protein	NA
UHGV-0132304_40	eggNOG-mapper	509191.AEDB02000020_gene3252	TIGRFAM phage major tail protein, phi13 family	NA
UHGV-0132304_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0132304_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0132304_41	UniRef90	UniRef90_UPI0013D62C30	HK97 gp10 family phage protein	NA
UHGV-0132304_41	eggNOG-mapper	1121289.JHVL01000019_gene663	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-0132304_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0132304_42	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0132304_42	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0132304_43	PHROG	phrog_19734	NA	unknown function
UHGV-0132304_43	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0132304_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0132304_44	PHROG	phrog_2550	NA	unknown function
UHGV-0132304_44	Structural annotation	PF05135	NA	NA
UHGV-0132304_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-0132304_45	UniRef90	UniRef90_A6XMJ6	Phage capsid protein	NA
UHGV-0132304_45	eggNOG-mapper	396034.A6XMJ6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0132304_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0132304_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0132304_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0132304_46	KOfam	K06904	NA	NA
UHGV-0132304_46	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0132304_46	UniRef90	UniRef90_UPI0008716C68	HK97 family phage prohead protease	NA
UHGV-0132304_46	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0132304_46	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0132304_46	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0132304_46	COG	COG3740	Phage head maturation protease	NA
UHGV-0132304_46	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0132304_47	PHROG	phrog_12	portal protein	head and packaging
UHGV-0132304_47	UniRef90	UniRef90_A0A0L6JH89	Phage portal protein, HK97 family	NA
UHGV-0132304_47	eggNOG-mapper	398512.JQKC01000009_gene449	Phage portal protein	NA
UHGV-0132304_47	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0132304_47	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0132304_47	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0132304_47	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0132304_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0132304_48	UniRef90	UniRef90_UPI0011778C59	terminase large subunit	NA
UHGV-0132304_48	eggNOG-mapper	365048.Q0H264_9CAUD	Phage Terminase	NA
UHGV-0132304_48	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0132304_48	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0132304_48	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0132304_49	PHROG	phrog_21498	NA	unknown function
UHGV-0132304_49	UniRef90	UniRef90_F0NXT0	ParB-like nuclease	NA
UHGV-0132304_49	eggNOG-mapper	865938.Weevi_0265	DNA binding	NA
UHGV-0132304_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0132304_50	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0132304_50	UniRef90	UniRef90_A0A1X2FVG6	Terminase	NA
UHGV-0132304_50	eggNOG-mapper	1121105.ATXL01000027_gene741	Phage terminase, small subunit	NA
UHGV-0132304_50	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0132304_50	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0132304_50	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA