UHGV-0132322

Genome information

Genome length 32,563 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132322
vOTU ID	vOTU-069464
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_350202
BioSample	SAMN02334139
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.16
Jumbo phage	No

Genome content
Genome length	32,563 bps
GC content	43.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.56%
Average CDS length	607.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132322_1	KOfam	K14059	int; integrase	NA
UHGV-0132322_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0132322_1	UniRef90	UniRef90_A0A413G0Q9	Site-specific integrase	NA
UHGV-0132322_1	eggNOG-mapper	641112.ACOK01000036_gene788	Belongs to the 'phage' integrase family	NA
UHGV-0132322_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0132322_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0132322_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0132322_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0132322_2	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0132322_2	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0132322_2	UniRef90	UniRef90_R6GVF3	HicB-like domain-containing protein	NA
UHGV-0132322_2	eggNOG-mapper	397288.C806_02660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0132322_2	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0132322_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0132322_2	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0132322_3	eggNOG-mapper	471875.RUMLAC_02311	Helix-turn-helix XRE-family like proteins	NA
UHGV-0132322_3	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0132322_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0132322_4	PHROG	phrog_435	endolysin	lysis
UHGV-0132322_4	UniRef90	UniRef90_A0A350XYL2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0132322_4	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0132322_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0132322_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0132322_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0132322_4	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0132322_5	PHROG	phrog_263	holin	lysis
UHGV-0132322_5	UniRef90	UniRef90_A0A355KVP4	Phage holin	NA
UHGV-0132322_5	eggNOG-mapper	445971.ANASTE_00091	SPP1 phage holin	NA
UHGV-0132322_5	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0132322_5	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0132322_5	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0132322_6	PHROG	phrog_1863	NA	unknown function
UHGV-0132322_6	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0132322_12	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0132322_12	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-0132322_12	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0132322_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0132322_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0132322_12	COG	COG4926	Phage-related protein	NA
UHGV-0132322_13	UniRef90	UniRef90_UPI001F3FF983	phage tail protein	NA
UHGV-0132322_13	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0132322_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0132322_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0132322_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0132322_14	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-0132322_14	eggNOG-mapper	411470.RUMGNA_02076	Phage tail tape measure protein, TP901 family	NA
UHGV-0132322_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0132322_14	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0132322_15	Structural annotation	PF11836	NA	NA
UHGV-0132322_16	PHROG	phrog_88	major tail protein	tail
UHGV-0132322_16	UniRef90	UniRef90_UPI000BA43BBF	major tail protein	NA
UHGV-0132322_16	eggNOG-mapper	665950.HMPREF1025_02683	phage major tail protein, phi13 family	NA
UHGV-0132322_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0132322_16	COG	COG5492	NA	NA
UHGV-0132322_17	eggNOG-mapper	573061.Clocel_3971	High confidence in function and specificity	NA
UHGV-0132322_17	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0132322_18	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-0132322_18	eggNOG-mapper	97139.C824_05967	Phage protein, HK97 gp10 family	NA
UHGV-0132322_18	Structural annotation	TIGR01725	NA	NA
UHGV-0132322_19	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0132322_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0132322_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0132322_20	PHROG	phrog_5223	neck protein	connector
UHGV-0132322_20	UniRef90	UniRef90_A0A1J9V7A2	DNA-packaging protein	NA
UHGV-0132322_20	eggNOG-mapper	318464.IO99_13745	NA	NA
UHGV-0132322_20	Structural annotation	TIGR01560	NA	NA
UHGV-0132322_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0132322_21	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0132322_21	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0132322_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0132322_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0132322_21	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0132322_22	KOfam	K06904	NA	NA
UHGV-0132322_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0132322_22	UniRef90	UniRef90_A0A2V2GKJ3	HK97 family phage prohead protease	NA
UHGV-0132322_22	eggNOG-mapper	1321814.HMPREF9089_00929	Caudovirus prohead serine protease	NA
UHGV-0132322_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0132322_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0132322_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0132322_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0132322_23	UniRef90	UniRef90_A0A2V2GK98	Portal protein	NA
UHGV-0132322_23	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-0132322_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0132322_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0132322_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0132322_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0132322_24	UniRef90	UniRef90_C9LCN6	Putative phage terminase, large subunit	NA
UHGV-0132322_24	eggNOG-mapper	411470.RUMGNA_02062	NA	NA
UHGV-0132322_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0132322_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0132322_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0132322_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0132322_25	PHROG	phrog_1066	NA	unknown function
UHGV-0132322_25	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-0132322_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0132322_26	UniRef90	UniRef90_D9SQ19	Prophage LambdaBa04, GP54	NA
UHGV-0132322_26	eggNOG-mapper	1203606.HMPREF1526_00983	HNH endonuclease	NA
UHGV-0132322_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0132322_27	Structural annotation	PF09055	NA	NA
UHGV-0132322_28	PHROG	phrog_11237	NA	unknown function
UHGV-0132322_28	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0132322_29	PHROG	phrog_824	NA	unknown function
UHGV-0132322_29	UniRef90	UniRef90_R6DT92	VRR-NUC domain-containing protein	NA
UHGV-0132322_29	eggNOG-mapper	1414720.CBYM010000002_gene588	VRR-NUC domain	NA
UHGV-0132322_29	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0132322_29	Structural annotation	PF08774	NA	NA
UHGV-0132322_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0132322_30	eggNOG-mapper	561177.ANHYDRO_01389	NA	NA
UHGV-0132322_30	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0132322_31	PHROG	phrog_20229	NA	unknown function
UHGV-0132322_31	UniRef90	UniRef90_D7GQL4	Transmembrane Fragile-X-F protein	NA
UHGV-0132322_31	Structural annotation	TIGR04438	NA	NA
UHGV-0132322_32	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0132322_32	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0132322_32	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0132322_33	PHROG	phrog_24368	NA	unknown function
UHGV-0132322_34	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0132322_34	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0132322_34	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0132322_34	Pfam	PF14359	NA	DUF4406
UHGV-0132322_34	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0132322_36	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0132322_36	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0132322_36	UniRef90	UniRef90_UPI001EE11EA1	site-specific DNA-methyltransferase	NA
UHGV-0132322_36	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0132322_36	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0132322_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0132322_36	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0132322_41	PHROG	phrog_15609	NA	unknown function
UHGV-0132322_41	UniRef90	UniRef90_UPI001C12751D	NA	NA
UHGV-0132322_41	eggNOG-mapper	1501230.ET33_21155	NA	NA
UHGV-0132322_41	Pfam	PF11300	NA	DUF3102
UHGV-0132322_41	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0132322_41	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0132322_42	PHROG	phrog_8470	NA	unknown function
UHGV-0132322_42	UniRef90	UniRef90_UPI0019580896	PcfJ domain-containing protein	NA
UHGV-0132322_42	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-0132322_42	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0132322_42	Structural annotation	PF14284	NA	NA
UHGV-0132322_43	PHROG	phrog_36399	NA	unknown function
UHGV-0132322_43	eggNOG-mapper	1226322.HMPREF1545_00099	NA	NA
UHGV-0132322_44	UniRef90	UniRef90_A0A3D1LDL3	DNA-binding protein	NA
UHGV-0132322_44	eggNOG-mapper	1235797.C816_00778	TIGRFAM DNA binding domain, excisionase family	NA
UHGV-0132322_45	eggNOG-mapper	936573.HMPREF1147_0113	Helix-turn-helix XRE-family like proteins	NA
UHGV-0132322_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132322_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0132322_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0132322_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0132322_46	UniRef90	UniRef90_R6DTB4	Peptidase S24-like protein	NA
UHGV-0132322_46	eggNOG-mapper	1449343.JQLQ01000002_gene1558	transcriptional	NA
UHGV-0132322_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132322_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0132322_46	Structural annotation	PF12844, MF_02017, NF041951, COG3655	NA	NA
UHGV-0132322_47	PHROG	phrog_1914	NA	unknown function
UHGV-0132322_47	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-0132322_47	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0132322_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0132322_47	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0132322_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0132322_48	KOfam	K03763	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	NA
UHGV-0132322_48	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0132322_48	UniRef90	UniRef90_A0A7C9H3B0	BRCT domain-containing protein	NA
UHGV-0132322_48	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0132322_48	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0132322_48	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0132322_48	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0132322_48	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0132322_48	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0132322_48	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0132322_49	eggNOG-mapper	1105029.HMPREF1137_1911	NA	NA
UHGV-0132322_49	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0132322_50	eggNOG-mapper	1378168.N510_01848	Belongs to the 'phage' integrase family	NA
UHGV-0132322_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA