UHGV-0132388

Genome information

Genome length 30,530 bps

CDS count 59

Completeness 75.99% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132388
vOTU ID	vOTU-026385
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_366143
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.03
Jumbo phage	No

Genome content
Genome length	30,530 bps
GC content	42.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.24%
Average CDS length	476.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132388_1	PHROG	phrog_9854	NA	unknown function
UHGV-0132388_1	UniRef90	UniRef90_A0A0M2VQ64	LPD38 domain-containing protein	NA
UHGV-0132388_1	eggNOG-mapper	1123288.SOV_4c02780	protein secretion by the type IV secretion system	NA
UHGV-0132388_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0132388_1	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0132388_2	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0132388_2	PHROG	phrog_894	endolysin	lysis
UHGV-0132388_2	UniRef90	UniRef90_A0A3B8P2A9	Peptidase M15	NA
UHGV-0132388_2	eggNOG-mapper	390235.PputW619_1627	peptidase M15A	NA
UHGV-0132388_2	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0132388_2	COG	COG3108	NA	NA
UHGV-0132388_2	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0132388_3	PHROG	phrog_4105	NA	unknown function
UHGV-0132388_5	PHROG	phrog_6918	holin	lysis
UHGV-0132388_5	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0132388_5	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0132388_6	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0132388_6	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0132388_6	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0132388_6	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0132388_7	PHROG	phrog_21718	NA	unknown function
UHGV-0132388_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0132388_9	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0132388_10	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0132388_12	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0132388_12	PHROG	phrog_95	integrase	integration and excision
UHGV-0132388_12	UniRef90	UniRef90_UPI0003130B23	recombinase family protein	NA
UHGV-0132388_12	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-0132388_12	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0132388_12	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0132388_12	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0132388_12	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0132388_14	UniRef90	UniRef90_UPI0005EB01D8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0132388_14	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-0132388_14	Structural annotation	PF06114	NA	NA
UHGV-0132388_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0132388_15	UniRef90	UniRef90_R7N2W9	DNA-binding helix-turn-helix protein	NA
UHGV-0132388_15	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0132388_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0132388_15	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0132388_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0132388_18	UniRef90	UniRef90_A0A807DIK3	XRE family transcriptional regulator	NA
UHGV-0132388_18	eggNOG-mapper	1140002.I570_01475	Helix-turn-helix XRE-family like proteins	NA
UHGV-0132388_18	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0132388_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0132388_18	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0132388_22	PHROG	phrog_22529	NA	unknown function
UHGV-0132388_22	UniRef90	UniRef90_R6EKT9	3D domain-containing protein	NA
UHGV-0132388_22	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0132388_22	Pfam	PF06725	3D domain	3D
UHGV-0132388_22	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0132388_22	Structural annotation	PF06725, MF_02071, NF040677, COG3584	NA	NA
UHGV-0132388_23	PHROG	phrog_2113	NA	unknown function
UHGV-0132388_25	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0132388_25	UniRef90	UniRef90_UPI001CF7F8A4	ERF family protein	NA
UHGV-0132388_25	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0132388_25	Pfam	PF04404	ERF superfamily	ERF
UHGV-0132388_25	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0132388_26	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132388_26	UniRef90	UniRef90_UPI001CF8591D	YqaJ viral recombinase family protein	NA
UHGV-0132388_26	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0132388_26	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0132388_26	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0132388_26	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0132388_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0132388_27	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0132388_27	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0132388_27	Structural annotation	PF05772	NA	NA
UHGV-0132388_28	PHROG	phrog_7566	NA	unknown function
UHGV-0132388_28	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA
UHGV-0132388_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0132388_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0132388_29	UniRef90	UniRef90_R6E0A2	Single-stranded DNA-binding protein	NA
UHGV-0132388_29	eggNOG-mapper	1120998.AUFC01000019_gene325	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0132388_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0132388_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0132388_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0132388_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0132388_29	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0132388_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0132388_30	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0132388_30	UniRef90	UniRef90_R6DSN2	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0132388_30	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0132388_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0132388_30	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0132388_31	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0132388_31	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-0132388_31	eggNOG-mapper	646529.Desaci_3039	Transcriptional regulator	NA
UHGV-0132388_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0132388_31	Structural annotation	PF08222, NF033788, COG0640	NA	NA
UHGV-0132388_32	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0132388_32	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0132388_32	UniRef90	UniRef90_R6DSN6	Replicative DNA helicase	NA
UHGV-0132388_32	eggNOG-mapper	1256908.HMPREF0373_01003	NA	NA
UHGV-0132388_32	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0132388_32	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0132388_32	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0132388_32	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0132388_35	PHROG	phrog_14105	NA	unknown function
UHGV-0132388_35	UniRef90	UniRef90_UPI001CA593D4	pentapeptide repeat-containing protein	NA
UHGV-0132388_35	eggNOG-mapper	97138.C820_00368	PPE family	NA
UHGV-0132388_35	COG	COG5651	PPE-repeat protein	NA
UHGV-0132388_37	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0132388_40	PHROG	phrog_21026	NA	unknown function
UHGV-0132388_47	PHROG	phrog_25385	NA	unknown function
UHGV-0132388_47	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-0132388_49	Structural annotation	PF18066	NA	NA
UHGV-0132388_50	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0132388_53	PHROG	phrog_15863	NA	unknown function
UHGV-0132388_53	UniRef90	UniRef90_A0A644WI33	J domain-containing protein	NA
UHGV-0132388_53	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0132388_53	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0132388_54	Structural annotation	NF040976	NA	NA
UHGV-0132388_56	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0132388_56	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-0132388_56	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0132388_56	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0132388_56	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0132388_56	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0132388_56	COG	COG5362	Phage terminase large subunit	NA
UHGV-0132388_56	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0132388_58	PHROG	phrog_156	portal protein	head and packaging
UHGV-0132388_58	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0132388_58	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA