UHGV-0132391

Genome information

Genome length 26,049 bps

CDS count 42

Completeness 61.48% (medium-quality)

geNomad score 0.9694

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132391
vOTU ID	vOTU-040115
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_366144
BioSample	SAMN03283286
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9694
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.04
Jumbo phage	No

Genome content
Genome length	26,049 bps
GC content	46.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.31%
Average CDS length	588.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132391_1	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0132391_1	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0132391_1	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0132391_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0132391_4	PHROG	phrog_291	endolysin	lysis
UHGV-0132391_4	UniRef90	UniRef90_UPI000A26BBDC	glycoside hydrolase family 25 protein	NA
UHGV-0132391_4	eggNOG-mapper	1105031.HMPREF1141_1412	family 25	NA
UHGV-0132391_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0132391_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0132391_4	Structural annotation	PF01183, NF002575, COG3757	NA	NA
UHGV-0132391_5	PHROG	phrog_1129	holin	lysis
UHGV-0132391_5	UniRef90	UniRef90_R7FCA0	Phage holin	NA
UHGV-0132391_5	eggNOG-mapper	537013.CLOSTMETH_01754	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0132391_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0132391_5	Structural annotation	PF16079	NA	NA
UHGV-0132391_6	PHROG	phrog_2310	NA	unknown function
UHGV-0132391_8	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-0132391_9	PHROG	phrog_18725	NA	unknown function
UHGV-0132391_9	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0132391_11	PHROG	phrog_35892	NA	unknown function
UHGV-0132391_11	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0132391_11	Structural annotation	PF13306	NA	NA
UHGV-0132391_12	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-0132391_12	PHROG	phrog_32779	NA	unknown function
UHGV-0132391_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0132391_12	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0132391_13	PHROG	phrog_13879	NA	unknown function
UHGV-0132391_13	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0132391_13	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0132391_14	PHROG	phrog_1194	NA	unknown function
UHGV-0132391_14	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0132391_14	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0132391_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0132391_15	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0132391_15	COG	COG1511	NA	NA
UHGV-0132391_15	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0132391_16	PHROG	phrog_706	NA	unknown function
UHGV-0132391_16	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0132391_16	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0132391_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0132391_16	Structural annotation	PF06854	NA	NA
UHGV-0132391_17	PHROG	phrog_11299	NA	unknown function
UHGV-0132391_17	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0132391_17	Structural annotation	PF10666	NA	NA
UHGV-0132391_18	PHROG	phrog_3099	NA	unknown function
UHGV-0132391_18	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0132391_18	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0132391_19	PHROG	phrog_3266	tail completion	connector
UHGV-0132391_19	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0132391_19	Structural annotation	PF12691	NA	NA
UHGV-0132391_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0132391_20	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0132391_20	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0132391_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0132391_20	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0132391_21	PHROG	phrog_3366	NA	unknown function
UHGV-0132391_21	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0132391_21	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0132391_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0132391_22	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0132391_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0132391_23	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0132391_23	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0132391_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0132391_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0132391_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0132391_23	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0132391_24	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0132391_24	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0132391_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0132391_25	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0132391_25	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0132391_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0132391_25	COG	COG2369	NA	NA
UHGV-0132391_25	Structural annotation	PF06152	NA	NA
UHGV-0132391_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0132391_26	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0132391_26	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0132391_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0132391_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0132391_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0132391_27	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0132391_27	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0132391_27	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0132391_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0132391_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0132391_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0132391_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0132391_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0132391_28	UniRef90	UniRef90_UPI00147EE5B7	LuxR family transcriptional regulator	NA
UHGV-0132391_28	Structural annotation	PF13022	NA	NA
UHGV-0132391_30	eggNOG-mapper	446462.Amir_3266	NA	NA
UHGV-0132391_31	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0132391_31	UniRef90	UniRef90_A0A417HAM3	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0132391_31	eggNOG-mapper	358220.C380_09765	sulfate reduction	NA
UHGV-0132391_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0132391_31	Structural annotation	PF01507, MF_00345, NF006351, COG0175	NA	NA
UHGV-0132391_32	Pfam	PF13508	Acetyltransferase (GNAT) domain	Acetyltransf_7
UHGV-0132391_32	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0132391_36	PHROG	phrog_16123	NA	unknown function
UHGV-0132391_36	eggNOG-mapper	380358.XALC_0236	NA	NA
UHGV-0132391_40	UniRef90	UniRef90_A0A374AB28	Thymidylate synthase ThyX	NA
UHGV-0132391_40	eggNOG-mapper	935948.KE386495_gene2250	NA	NA
UHGV-0132391_40	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0132391_40	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0132391_41	UniRef90	UniRef90_A0A3A6ECV8	NA	NA
UHGV-0132391_41	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0132391_41	Pfam	PF04448	NA	DUF551
UHGV-0132391_41	Structural annotation	PF04448	NA	NA