UHGV-0132531

Genome information

vOTU vOTU-001947

Genome length 45,536 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132531
vOTU ID	vOTU-001947
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_393545
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.68
Jumbo phage	No

Genome content
Genome length	45,536 bps
GC content	59.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	88.67%
Average CDS length	614.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132531_1	PHROG	phrog_443	holin	lysis
UHGV-0132531_1	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0132531_2	PHROG	phrog_14030	NA	unknown function
UHGV-0132531_2	UniRef90	UniRef90_A0A6N2T3V5	Peptidoglycan binding domain protein	NA
UHGV-0132531_2	eggNOG-mapper	401473.BDP_0599	NLP P60 protein	NA
UHGV-0132531_2	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0132531_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0132531_2	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0132531_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0132531_2	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-0132531_4	PHROG	phrog_1397	NA	unknown function
UHGV-0132531_4	UniRef90	UniRef90_A0A6N2T369	PRTRC system protein E	NA
UHGV-0132531_4	eggNOG-mapper	1435051.BMOU_0761	NA	NA
UHGV-0132531_5	eggNOG-mapper	566552.BIFCAT_00857	NA	NA
UHGV-0132531_6	PHROG	phrog_15074	NA	unknown function
UHGV-0132531_6	UniRef90	UniRef90_W4NB29	Putative antifreeze protein	NA
UHGV-0132531_6	eggNOG-mapper	1435051.BMOU_0764	nuclear chromosome segregation	NA
UHGV-0132531_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0132531_7	PHROG	phrog_1885	minor tail protein	tail
UHGV-0132531_7	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-0132531_7	eggNOG-mapper	566552.BIFCAT_00859	NA	NA
UHGV-0132531_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0132531_8	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0132531_8	eggNOG-mapper	566552.BIFCAT_00860	NA	NA
UHGV-0132531_8	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0132531_9	PHROG	phrog_5577	minor tail protein	tail
UHGV-0132531_9	UniRef90	UniRef90_W4N9I3	Phage tail domain protein	NA
UHGV-0132531_9	eggNOG-mapper	566552.BIFCAT_00861	NA	NA
UHGV-0132531_9	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0132531_10	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0132531_10	UniRef90	UniRef90_A0A6N2T1H3	Phage tail tape measure protein	NA
UHGV-0132531_10	eggNOG-mapper	398513.BBNG_00858	Phage-related minor tail protein	NA
UHGV-0132531_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0132531_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0132531_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0132531_10	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0132531_11	UniRef90	UniRef90_A0A173Y8M1	Phage terminase protein large subunit-like protein	NA
UHGV-0132531_11	eggNOG-mapper	158787.BSCA_0729	NA	NA
UHGV-0132531_12	UniRef90	UniRef90_A0A087DRR6	DNAase primase	NA
UHGV-0132531_12	eggNOG-mapper	158787.BSCA_0730	NA	NA
UHGV-0132531_12	Structural annotation	PF08890	NA	NA
UHGV-0132531_13	PHROG	phrog_2491	major tail protein	tail
UHGV-0132531_13	UniRef90	UniRef90_A0A087DGN0	Gp28	NA
UHGV-0132531_13	eggNOG-mapper	158787.BSCA_0732	NA	NA
UHGV-0132531_13	Structural annotation	PF16463, TIGR01611, COG5437	NA	NA
UHGV-0132531_14	UniRef90	UniRef90_A0A173YUS4	Transcriptional regulator	NA
UHGV-0132531_14	eggNOG-mapper	1437603.BMON_0133	NA	NA
UHGV-0132531_14	Structural annotation	PF06141	NA	NA
UHGV-0132531_15	PHROG	phrog_19109	NA	unknown function
UHGV-0132531_15	eggNOG-mapper	158787.BSCA_0734	NA	NA
UHGV-0132531_15	Structural annotation	TIGR01725	NA	NA
UHGV-0132531_16	PHROG	phrog_13779	NA	unknown function
UHGV-0132531_16	UniRef90	UniRef90_A0A173YWC6	Phage associated protein	NA
UHGV-0132531_16	eggNOG-mapper	158787.BSCA_0735	NA	NA
UHGV-0132531_16	Pfam	PF19586	NA	DUF6093
UHGV-0132531_16	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0132531_17	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0132531_17	UniRef90	UniRef90_UPI001BDC2B90	phage head-tail connector protein	NA
UHGV-0132531_17	eggNOG-mapper	158787.BSCA_0736	NA	NA
UHGV-0132531_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0132531_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0132531_18	UniRef90	UniRef90_A0A173Y720	Major capsid subunit gp9	NA
UHGV-0132531_18	eggNOG-mapper	158787.BSCA_0738	Phage capsid family	NA
UHGV-0132531_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0132531_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0132531_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0132531_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0132531_19	PHROG	phrog_15003	head scaffolding protein	head and packaging
UHGV-0132531_19	eggNOG-mapper	158787.BSCA_0739	NA	NA
UHGV-0132531_19	Structural annotation	PF14265	NA	NA
UHGV-0132531_20	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0132531_20	UniRef90	UniRef90_A0A173Y8N6	Gp4 phagic protein	NA
UHGV-0132531_20	eggNOG-mapper	158787.BSCA_0741	NA	NA
UHGV-0132531_21	PHROG	phrog_104	portal protein	head and packaging
UHGV-0132531_21	UniRef90	UniRef90_A0A0G9MEM4	Plasmid partitioning protein ParA	NA
UHGV-0132531_21	eggNOG-mapper	398513.BBNG_00846	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0132531_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0132531_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0132531_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0132531_22	UniRef90	UniRef90_A0A173Y8F7	Phage terminase protein large subunit TerL	NA
UHGV-0132531_22	eggNOG-mapper	158787.BSCA_0743	Terminase	NA
UHGV-0132531_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0132531_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0132531_23	PHROG	phrog_1496	terminase small subunit	head and packaging
UHGV-0132531_23	UniRef90	UniRef90_A0A0G9MAU8	Gp25	NA
UHGV-0132531_23	eggNOG-mapper	398513.BBNG_00844	NA	NA
UHGV-0132531_24	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0132531_24	UniRef90	UniRef90_A0A0G9MAV2	Gp60	NA
UHGV-0132531_24	eggNOG-mapper	702459.BBPR_0907	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0132531_24	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0132531_24	Structural annotation	PF09250	NA	NA
UHGV-0132531_25	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132531_25	UniRef90	UniRef90_A0A6N2T2B9	HNH endonuclease	NA
UHGV-0132531_25	eggNOG-mapper	702459.BBPR_0906	NA	NA
UHGV-0132531_26	PHROG	phrog_908	NA	unknown function
UHGV-0132531_26	UniRef90	UniRef90_UPI0018B0CF81	helix-turn-helix domain-containing protein	NA
UHGV-0132531_26	eggNOG-mapper	566552.BIFCAT_00879	tRNA 5'-leader removal	NA
UHGV-0132531_26	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0132531_26	Structural annotation	COG0789	NA	NA
UHGV-0132531_27	UniRef90	UniRef90_A0A8A7J068	Helix-turn-helix domain-containing protein	NA
UHGV-0132531_27	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-0132531_27	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0132531_27	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0132531_27	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0132531_31	Structural annotation	PF07073	NA	NA
UHGV-0132531_32	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0132531_32	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0132531_32	UniRef90	UniRef90_A0A6N2T594	Oligoribonuclease	NA
UHGV-0132531_32	eggNOG-mapper	566552.BIFCAT_00884	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0132531_32	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0132531_32	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-0132531_33	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132531_33	UniRef90	UniRef90_A0A086ZNU8	Gp77 phage protein	NA
UHGV-0132531_33	eggNOG-mapper	398513.BBNG_00830	HNH endonuclease	NA
UHGV-0132531_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0132531_34	Structural annotation	PF02185, NF012003	NA	NA
UHGV-0132531_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0132531_35	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0132531_35	UniRef90	UniRef90_UPI0018C1DC0F	ParB/RepB/Spo0J family partition protein	NA
UHGV-0132531_35	eggNOG-mapper	1435051.BMOU_0252	ParB-like nuclease domain	NA
UHGV-0132531_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0132531_35	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0132531_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0132531_36	PHROG	phrog_3926	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0132531_36	UniRef90	UniRef90_W4NB45	Zinc finger protein 575	NA
UHGV-0132531_36	eggNOG-mapper	401473.BDP_0914	Helix-turn-helix domain	NA
UHGV-0132531_37	eggNOG-mapper	1435051.BMOU_0254	NA	NA
UHGV-0132531_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0132531_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0132531_38	UniRef90	UniRef90_A0A8A7J2T4	Single-stranded DNA-binding protein	NA
UHGV-0132531_38	eggNOG-mapper	1435051.BMOU_0255	single-stranded DNA-binding protein	NA
UHGV-0132531_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0132531_38	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0132531_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0132531_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0132531_38	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0132531_43	UniRef90	UniRef90_A0A1G6HM54	Transcriptional regulator, AlpA family	NA
UHGV-0132531_43	eggNOG-mapper	1273125.Rrhod_4099	Transcriptional regulator	NA
UHGV-0132531_43	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0132531_44	Structural annotation	PF11305, MF_01360, NF010236	NA	NA
UHGV-0132531_45	eggNOG-mapper	702459.BBPR_0882	NA	NA
UHGV-0132531_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0132531_48	eggNOG-mapper	702459.BBPR_0880	NA	NA
UHGV-0132531_49	PHROG	phrog_5978	NA	unknown function
UHGV-0132531_49	UniRef90	UniRef90_A0A1X2Z8Q2	Cell division protein Fic	NA
UHGV-0132531_49	eggNOG-mapper	547043.BIFPSEUDO_03641	Fic/DOC family	NA
UHGV-0132531_49	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0132531_49	COG	COG1510	DNA-binding transcriptional regulator GbsR, MarR family	NA
UHGV-0132531_49	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0132531_50	PHROG	phrog_87	metallo-protease	other
UHGV-0132531_50	UniRef90	UniRef90_A0A1V8QCW7	Peptidase_M78 domain-containing protein	NA
UHGV-0132531_50	eggNOG-mapper	398513.BBNG_00813	NA	NA
UHGV-0132531_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0132531_50	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0132531_51	UniRef90	UniRef90_UPI0018C26A30	NA	NA
UHGV-0132531_51	Pfam	PF19483	NA	DUF6019
UHGV-0132531_52	UniRef90	UniRef90_A0A087BZX5	TM2 domain-containing protein	NA
UHGV-0132531_52	eggNOG-mapper	1437603.BMON_1173	NA	NA
UHGV-0132531_54	PHROG	phrog_87	metallo-protease	other
UHGV-0132531_54	UniRef90	UniRef90_A0A6N2T6X3	Peptidase_M78 domain-containing protein	NA
UHGV-0132531_54	eggNOG-mapper	1120944.JONS01000056_gene53	Zn peptidase	NA
UHGV-0132531_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0132531_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0132531_54	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0132531_55	UniRef90	UniRef90_A0A087B3Z5	Putative growth arrest and DNA-damage-inducible proteins-interacting protein 1	NA
UHGV-0132531_55	eggNOG-mapper	1688.BCUN_0240	NA	NA
UHGV-0132531_56	eggNOG-mapper	702459.BBPR_0872	NA	NA
UHGV-0132531_57	UniRef90	UniRef90_A0A2K9BPG4	N-acetyltransferase domain-containing protein	NA
UHGV-0132531_57	eggNOG-mapper	1437610.BREU_1425	NA	NA
UHGV-0132531_59	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0132531_59	UniRef90	UniRef90_A0A087D506	Putative phagic protein	NA
UHGV-0132531_59	eggNOG-mapper	78346.BRUM_0375	Transcriptional regulator	NA
UHGV-0132531_59	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0132531_59	Structural annotation	PF12728, NF033499, COG3311	NA	NA
UHGV-0132531_60	KOfam	K14059	int; integrase	NA
UHGV-0132531_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0132531_60	UniRef90	UniRef90_W4NCN8	Integrase	NA
UHGV-0132531_60	eggNOG-mapper	1435051.BMOU_0270	Phage integrase family	NA
UHGV-0132531_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0132531_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0132531_60	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0132531_61	KOfam	K14059	int; integrase	NA
UHGV-0132531_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0132531_61	UniRef90	UniRef90_UPI0009B9DC0D	tyrosine-type recombinase/integrase	NA
UHGV-0132531_61	eggNOG-mapper	1437606.BBOH_1467	Phage integrase family	NA
UHGV-0132531_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0132531_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0132531_61	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA
UHGV-0132531_62	UniRef90	UniRef90_A0A087AYE5	Putative replication protein	NA
UHGV-0132531_62	eggNOG-mapper	875328.JDM601_0775	NA	NA
UHGV-0132531_63	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0132531_63	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0132531_63	UniRef90	UniRef90_R6GLQ1	FtsK	NA
UHGV-0132531_63	eggNOG-mapper	585199.HMPREF0577_2223	FtsK/SpoIIIE family	NA
UHGV-0132531_63	Pfam	PF05707	Zonular occludens toxin (Zot)	Zot
UHGV-0132531_63	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA