UHGV-0132556

Genome information

Genome length 32,923 bps

CDS count 48

Completeness 93.75% (high-quality)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132556
vOTU ID	vOTU-065452
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_378062
BioSample	SAMN03922463
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.75% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.13
Jumbo phage	No

Genome content
Genome length	32,923 bps
GC content	39.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	87.82%
Average CDS length	605.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132556_1	PHROG	phrog_199	holin	lysis
UHGV-0132556_1	UniRef90	UniRef90_A0A349YRM9	Holin	NA
UHGV-0132556_1	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0132556_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0132556_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0132556_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0132556_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0132556_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0132556_2	PHROG	phrog_291	endolysin	lysis
UHGV-0132556_2	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0132556_2	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0132556_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0132556_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0132556_2	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0132556_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0132556_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0132556_3	UniRef90	UniRef90_A0A355TMN8	Tyr recombinase domain-containing protein	NA
UHGV-0132556_3	eggNOG-mapper	764298.STRMA_0402	Belongs to the 'phage' integrase family	NA
UHGV-0132556_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0132556_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0132556_3	Structural annotation	PF00589	NA	NA
UHGV-0132556_4	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0132556_4	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0132556_4	COG	COG4675	Phage tail collar domain	NA
UHGV-0132556_5	PHROG	phrog_11037	NA	unknown function
UHGV-0132556_5	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0132556_5	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0132556_5	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0132556_5	Structural annotation	PF18013	NA	NA
UHGV-0132556_6	PHROG	phrog_13289	tail protein	tail
UHGV-0132556_6	UniRef90	UniRef90_A0A0M6WI67	Prophage_tail domain-containing protein	NA
UHGV-0132556_6	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0132556_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0132556_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0132556_6	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0132556_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0132556_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0132556_7	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-0132556_7	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0132556_7	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0132556_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0132556_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0132556_8	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0132556_8	PHROG	phrog_23464	NA	unknown function
UHGV-0132556_8	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0132556_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0132556_10	PHROG	phrog_88	major tail protein	tail
UHGV-0132556_10	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-0132556_10	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-0132556_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0132556_10	COG	COG5492	NA	NA
UHGV-0132556_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0132556_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0132556_11	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0132556_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0132556_11	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0132556_12	Structural annotation	PF05657	NA	NA
UHGV-0132556_13	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0132556_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0132556_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0132556_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0132556_15	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0132556_15	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0132556_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0132556_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0132556_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0132556_15	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0132556_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0132556_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0132556_16	UniRef90	UniRef90_A0A350VIU3	ATP-dependent Clp protease proteolytic subunit (Fragment)	NA
UHGV-0132556_16	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0132556_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0132556_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0132556_16	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0132556_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0132556_17	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-0132556_17	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0132556_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0132556_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0132556_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0132556_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0132556_18	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0132556_18	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0132556_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0132556_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0132556_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0132556_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0132556_19	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0132556_19	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0132556_19	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0132556_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0132556_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0132556_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0132556_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132556_21	UniRef90	UniRef90_A0A0M6WIX4	HNHc domain-containing protein	NA
UHGV-0132556_21	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0132556_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0132556_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0132556_22	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0132556_22	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0132556_22	UniRef90	UniRef90_A0A3R6L2U9	HicB family protein	NA
UHGV-0132556_22	eggNOG-mapper	411460.RUMTOR_02082	NA	NA
UHGV-0132556_22	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0132556_22	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0132556_22	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0132556_23	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0132556_23	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0132556_23	UniRef90	UniRef90_A0A3R6LJR5	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0132556_23	eggNOG-mapper	592026.GCWU0000282_000315	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0132556_23	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0132556_23	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0132556_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0132556_29	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0132556_29	Structural annotation	PF02996	NA	NA
UHGV-0132556_32	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0132556_32	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0132556_33	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-0132556_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0132556_34	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0132556_34	UniRef90	UniRef90_A0A174GZH1	Probable chromosome-partitioning protein parB	NA
UHGV-0132556_34	eggNOG-mapper	626523.GCWU000342_01034	Belongs to the ParB family	NA
UHGV-0132556_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0132556_34	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0132556_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0132556_34	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0132556_35	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0132556_35	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0132556_35	UniRef90	UniRef90_A0A355TLN2	RNase H type-1 domain-containing protein	NA
UHGV-0132556_35	Pfam	PF00075	RNase H	RNase_H
UHGV-0132556_35	COG	COG0328	Ribonuclease HI	NA
UHGV-0132556_35	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0132556_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0132556_36	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0132556_36	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0132556_38	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-0132556_39	PHROG	phrog_9607	NA	unknown function
UHGV-0132556_39	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0132556_39	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0132556_41	PHROG	phrog_20330	NA	unknown function
UHGV-0132556_41	eggNOG-mapper	1094508.Tsac_2450	NA	NA
UHGV-0132556_43	UniRef90	UniRef90_A0A1C5RNH1	HTH_8 domain-containing protein	NA
UHGV-0132556_43	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0132556_43	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0132556_43	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0132556_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0132556_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0132556_44	UniRef90	UniRef90_UPI00156FB04E	helix-turn-helix domain-containing protein	NA
UHGV-0132556_44	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0132556_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132556_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0132556_44	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA
UHGV-0132556_47	PHROG	phrog_5783	NA	unknown function
UHGV-0132556_47	UniRef90	UniRef90_A0A0M6WJD5	NYN domain-containing protein	NA
UHGV-0132556_47	eggNOG-mapper	864563.HMPREF9166_1292	NYN domain	NA
UHGV-0132556_47	Pfam	PF01936	NYN domain	NYN
UHGV-0132556_47	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0132556_47	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-0132556_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0132556_48	PHROG	phrog_95	integrase	integration and excision
UHGV-0132556_48	UniRef90	UniRef90_C4Z7Z8	Site-specific recombinase	NA
UHGV-0132556_48	eggNOG-mapper	742765.HMPREF9457_02089	Resolvase, N terminal domain	NA
UHGV-0132556_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0132556_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-0132556_48	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0132556_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0132556_48	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA