UHGV-0132580

Genome information

Genome length 18,135 bps

CDS count 27

Completeness 98.86% (high-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132580
vOTU ID	vOTU-010433
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_357279
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.2
Jumbo phage	No

Genome content
Genome length	18,135 bps
GC content	34.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	94.43%
Average CDS length	635.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132580_4	PHROG	phrog_2150	terminase	head and packaging
UHGV-0132580_4	UniRef90	UniRef90_UPI0009B42C61	phage DNA encapsidation protein	NA
UHGV-0132580_4	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0132580_4	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0132580_4	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0132580_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0132580_5	PHROG	phrog_291	endolysin	lysis
UHGV-0132580_5	UniRef90	UniRef90_A0A8D6UFI2	Lysozyme	NA
UHGV-0132580_5	eggNOG-mapper	226185.EF_2086	Glycosyl hydrolases family 25	NA
UHGV-0132580_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0132580_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0132580_5	Structural annotation	PF01183, NF004283, COG3757	NA	NA
UHGV-0132580_6	UniRef90	UniRef90_A0A8D6UBB3	Holin	NA
UHGV-0132580_6	eggNOG-mapper	1158608.I583_01740	Bacteriophage holin family	NA
UHGV-0132580_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0132580_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0132580_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0132580_7	PHROG	phrog_11037	NA	unknown function
UHGV-0132580_7	UniRef90	UniRef90_A0A8D6UBP3	Tail protein with a lysozyme domain	NA
UHGV-0132580_7	eggNOG-mapper	768486.EHR_3011	amidase activity	NA
UHGV-0132580_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0132580_7	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0132580_7	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0132580_8	UniRef90	UniRef90_A0A8D6UEI3	Tail spike protein	NA
UHGV-0132580_8	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0132580_10	UniRef90	UniRef90_UPI000763ED34	alanine-zipper protein	NA
UHGV-0132580_10	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0132580_11	UniRef90	UniRef90_UPI000763ED34	alanine-zipper protein	NA
UHGV-0132580_11	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0132580_12	UniRef90	UniRef90_UPI000763ED34	alanine-zipper protein	NA
UHGV-0132580_12	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0132580_16	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0132580_16	UniRef90	UniRef90_A0A8D6XVH1	Lower collar protein (Virfam: adaptor Ad4)	NA
UHGV-0132580_16	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0132580_17	PHROG	phrog_2038	upper collar connector	connector
UHGV-0132580_17	UniRef90	UniRef90_A0A8D6XVF0	Upper collar protein (Virfam: portal)	NA
UHGV-0132580_17	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0132580_17	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0132580_17	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0132580_18	PHROG	phrog_2248	tail protein	tail
UHGV-0132580_18	UniRef90	UniRef90_A0A8D6XTA1	Major tail protein	NA
UHGV-0132580_18	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0132580_18	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0132580_18	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0132580_18	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0132580_19	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0132580_19	UniRef90	UniRef90_UPI000D1EFE69	phage head protein	NA
UHGV-0132580_19	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0132580_19	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0132580_20	PHROG	phrog_10439	head scaffolding protein	head and packaging
UHGV-0132580_20	UniRef90	UniRef90_A0A8D6UEM2	Scaffolding protein	NA
UHGV-0132580_20	Pfam	PF11418	Phi29 scaffolding protein	Scaffolding_pro
UHGV-0132580_22	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0132580_22	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0132580_22	UniRef90	UniRef90_A0A8D6UFH5	DNA-directed DNA polymerase	NA
UHGV-0132580_22	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0132580_22	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0132580_22	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0132580_23	PHROG	phrog_6358	DNA terminal protein	DNA, RNA and nucleotide metabolism
UHGV-0132580_23	UniRef90	UniRef90_A0A8D6UBA3	Terminal protein	NA
UHGV-0132580_23	Pfam	PF05435	Phi-29 DNA terminal protein GP3	Phi-29_GP3
UHGV-0132580_24	PHROG	phrog_14995	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0132580_24	UniRef90	UniRef90_A0A8D6UBN4	Single-stranded DNA-binding protein	NA
UHGV-0132580_24	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0132580_25	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0132580_25	UniRef90	UniRef90_A0A8D6UEH5	Histone-like protein	NA
UHGV-0132580_25	Pfam	PF17548	Histone-like Protein p6	p6
UHGV-0132580_25	Structural annotation	PF17548	NA	NA