UHGV-0132594

Genome information

Genome length 33,298 bps

CDS count 46

Completeness 70.40% (medium-quality)

geNomad score 0.9376

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132594
vOTU ID	vOTU-017445
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_356722
BioSample	SAMN02675515
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9376
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.5
Jumbo phage	No

Genome content
Genome length	33,298 bps
GC content	56.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	83.53%
Average CDS length	609.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132594_4	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0132594_4	PHROG	phrog_894	endolysin	lysis
UHGV-0132594_4	UniRef90	UniRef90_UPI001D0A8E96	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0132594_4	eggNOG-mapper	563192.HMPREF0179_02932	Peptidase M15	NA
UHGV-0132594_4	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0132594_4	COG	COG3108	NA	NA
UHGV-0132594_4	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0132594_5	UniRef90	UniRef90_UPI000D794B71	helix-turn-helix domain-containing protein	NA
UHGV-0132594_5	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0132594_6	eggNOG-mapper	1121441.AUCX01000022_gene765	NA	NA
UHGV-0132594_7	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0132594_7	UniRef90	UniRef90_UPI001D0BA489	phage terminase large subunit	NA
UHGV-0132594_7	eggNOG-mapper	1121441.AUCX01000022_gene766	Terminase RNaseH-like domain	NA
UHGV-0132594_7	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0132594_7	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0132594_7	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0132594_7	COG	COG5362	Phage terminase large subunit	NA
UHGV-0132594_7	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0132594_9	PHROG	phrog_474	phosphofructokinase	other
UHGV-0132594_9	UniRef90	UniRef90_UPI001D0B8E43	NA	NA
UHGV-0132594_9	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0132594_9	Pfam	PF19905	NA	DUF6378
UHGV-0132594_11	UniRef90	UniRef90_UPI001D0B5CBF	helix-turn-helix domain-containing protein	NA
UHGV-0132594_11	Structural annotation	PF13443, NF041677, COG1396	NA	NA
UHGV-0132594_12	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0132594_12	UniRef90	UniRef90_UPI001D0B7FF0	Bro-N domain-containing protein	NA
UHGV-0132594_12	eggNOG-mapper	768066.HELO_2103	PFAM BRO, N-terminal	NA
UHGV-0132594_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0132594_12	COG	COG3617	Prophage antirepressor	NA
UHGV-0132594_13	KOfam	K09882	cobS; cobaltochelatase CobS [EC:6.6.1.2]	NA
UHGV-0132594_13	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0132594_13	UniRef90	UniRef90_UPI001D0BDA4A	AAA family ATPase	NA
UHGV-0132594_13	eggNOG-mapper	1410620.SHLA_101c000120	AAA domain (dynein-related subfamily)	NA
UHGV-0132594_13	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-0132594_13	Pfam	PF08406	CbbQ/NirQ/NorQ C-terminal	CbbQ_C
UHGV-0132594_13	COG	COG0714	MoxR-like ATPase	NA
UHGV-0132594_13	Structural annotation	PF07728, MF_01314, TIGR01650, COG0714	NA	NA
UHGV-0132594_15	PHROG	phrog_6361	NA	unknown function
UHGV-0132594_15	UniRef90	UniRef90_UPI001D09D542	SprT-like domain-containing protein	NA
UHGV-0132594_15	eggNOG-mapper	891974.E05_51250	SprT-like family	NA
UHGV-0132594_15	Pfam	PF10263	SprT-like family	SprT-like
UHGV-0132594_15	COG	COG3091	Predicted Zn-dependent metalloprotease, SprT family	NA
UHGV-0132594_15	Structural annotation	PF10263, MF_00745, NF003339, COG3091	NA	NA
UHGV-0132594_18	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0132594_18	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0132594_18	UniRef90	UniRef90_UPI001D0AF222	DEAD/DEAH box helicase	NA
UHGV-0132594_18	eggNOG-mapper	935948.KE386495_gene1203	SNF2 family N-terminal domain	NA
UHGV-0132594_18	PADLOC	DpdE_00011	DpdE	DPD
UHGV-0132594_18	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0132594_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0132594_18	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0132594_18	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-0132594_19	eggNOG-mapper	1121334.KB911068_gene2269	NA	NA
UHGV-0132594_20	PHROG	phrog_23155	NA	unknown function
UHGV-0132594_20	eggNOG-mapper	877414.ATWA01000022_gene1638	NA	NA
UHGV-0132594_20	Structural annotation	PF18897	NA	NA
UHGV-0132594_21	PHROG	phrog_2478	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0132594_21	eggNOG-mapper	419610.Mext_2457	DNA primase	NA
UHGV-0132594_21	COG	COG1467	Eukaryotic-type DNA primase, catalytic (small) subunit	NA
UHGV-0132594_23	KOfam	K03657	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]	NA
UHGV-0132594_23	PHROG	phrog_1967	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0132594_23	UniRef90	UniRef90_UPI001D09A688	ATP-dependent helicase	NA
UHGV-0132594_23	eggNOG-mapper	498848.TaqDRAFT_4764	UvrD-like helicase C-terminal domain	NA
UHGV-0132594_23	PADLOC	GajB_00030	UrvD helicase	Gabija
UHGV-0132594_23	Pfam	PF00580	UvrD/REP helicase N-terminal domain	UvrD-helicase
UHGV-0132594_23	Pfam	PF13538	UvrD-like helicase C-terminal domain	UvrD_C_2
UHGV-0132594_23	COG	COG0210	Superfamily I DNA or RNA helicase	NA
UHGV-0132594_23	Structural annotation	PF00580, PF13361, MF_01920, TIGR01075, COG0210	NA	NA
UHGV-0132594_24	KOfam	K03574	mutT, NUDT15, MTH2; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]	NA
UHGV-0132594_24	UniRef90	UniRef90_UPI001D0BC69B	NUDIX domain-containing protein	NA
UHGV-0132594_24	Pfam	PF00293	NUDIX domain	NUDIX
UHGV-0132594_25	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132594_25	UniRef90	UniRef90_A0A1M6XTF7	VRR-NUC domain-containing protein	NA
UHGV-0132594_26	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0132594_26	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0132594_26	UniRef90	UniRef90_UPI001D09D2CC	HU family DNA-binding protein	NA
UHGV-0132594_26	eggNOG-mapper	331869.BAL199_25389	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0132594_26	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0132594_26	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0132594_26	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0132594_27	UniRef90	UniRef90_UPI001D0A9544	MucR family transcriptional regulator	NA
UHGV-0132594_27	eggNOG-mapper	1408428.JNJP01000011_gene1057	ROS/MUCR transcriptional regulator protein	NA
UHGV-0132594_27	Pfam	PF05443	ROS/MUCR transcriptional regulator protein	ROS_MUCR
UHGV-0132594_27	COG	COG4957	Predicted transcriptional regulator	NA
UHGV-0132594_28	UniRef90	UniRef90_UPI001163C833	phospholipase D-like domain-containing protein	NA
UHGV-0132594_28	eggNOG-mapper	471874.PROSTU_02558	PLD-like domain	NA
UHGV-0132594_28	COG	COG3886	HKD family nuclease	NA
UHGV-0132594_29	eggNOG-mapper	665942.HMPREF1022_00107	NA	NA
UHGV-0132594_30	KOfam	K14059	int; integrase	NA
UHGV-0132594_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0132594_30	UniRef90	UniRef90_UPI001D0B1502	site-specific integrase	NA
UHGV-0132594_30	eggNOG-mapper	596152.DesU5LDRAFT_1501	Phage integrase family	NA
UHGV-0132594_30	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0132594_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0132594_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0132594_30	Structural annotation	PF00589, PF13102, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0132594_32	KOfam	K14059	int; integrase	NA
UHGV-0132594_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0132594_32	UniRef90	UniRef90_UPI001D0A8CA0	integrase arm-type DNA-binding domain-containing protein	NA
UHGV-0132594_32	eggNOG-mapper	563192.HMPREF0179_01778	Belongs to the 'phage' integrase family	NA
UHGV-0132594_32	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0132594_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0132594_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0132594_32	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0132594_33	eggNOG-mapper	563192.HMPREF0179_02908	NA	NA
UHGV-0132594_36	UniRef90	UniRef90_UPI001D0AEFDC	helix-turn-helix domain containing protein	NA
UHGV-0132594_36	eggNOG-mapper	563192.HMPREF0179_01774	sequence-specific DNA binding	NA
UHGV-0132594_36	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0132594_36	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0132594_37	eggNOG-mapper	563192.HMPREF0179_01773	NA	NA
UHGV-0132594_39	UniRef90	UniRef90_A0A7W8C1M3	DNA-directed RNA polymerase subunit RPC12/RpoP	NA
UHGV-0132594_39	eggNOG-mapper	1408428.JNJP01000133_gene2462	NA	NA
UHGV-0132594_40	PHROG	phrog_674	NA	unknown function
UHGV-0132594_40	UniRef90	UniRef90_UPI0013EE3DEB	NA	NA
UHGV-0132594_40	eggNOG-mapper	563192.HMPREF0179_01770	NA	NA
UHGV-0132594_40	Pfam	PF07083	NA	DUF1351
UHGV-0132594_40	Structural annotation	PF07083	NA	NA
UHGV-0132594_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0132594_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0132594_41	UniRef90	UniRef90_E5Y6F6	Single-stranded DNA-binding protein	NA
UHGV-0132594_41	eggNOG-mapper	563192.HMPREF0179_01769	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0132594_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0132594_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0132594_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0132594_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0132594_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0132594_42	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0132594_42	UniRef90	UniRef90_F0RWM9	ERF family protein	NA
UHGV-0132594_42	eggNOG-mapper	563192.HMPREF0179_01768	ERF superfamily	NA
UHGV-0132594_42	Pfam	PF04404	ERF superfamily	ERF
UHGV-0132594_42	COG	COG0629	Single-stranded DNA-binding protein	NA