UHGV-0132597

Genome information

Genome length 37,878 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132597
vOTU ID	vOTU-071496
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_356708
BioSample	SAMN02675517
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.88
Jumbo phage	No

Genome content
Genome length	37,878 bps
GC content	41.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.17%
Average CDS length	605.79 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132597_1	KOfam	K14059	int; integrase	NA
UHGV-0132597_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0132597_1	UniRef90	UniRef90_A0A829NH64	Tyr recombinase domain-containing protein	NA
UHGV-0132597_1	eggNOG-mapper	1232453.BAIF02000010_gene3323	Phage integrase family	NA
UHGV-0132597_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0132597_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0132597_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0132597_2	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0132597_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0132597_2	UniRef90	UniRef90_UPI001186ABA3	3'-5' exonuclease	NA
UHGV-0132597_2	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-0132597_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0132597_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0132597_2	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0132597_2	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0132597_3	PHROG	phrog_87	metallo-protease	other
UHGV-0132597_3	UniRef90	UniRef90_UPI0015EBCD4F	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0132597_3	eggNOG-mapper	411470.RUMGNA_03229	NA	NA
UHGV-0132597_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0132597_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0132597_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0132597_4	UniRef90	UniRef90_UPI00046409A2	helix-turn-helix domain-containing protein	NA
UHGV-0132597_4	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0132597_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132597_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0132597_4	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0132597_5	UniRef90	UniRef90_UPI0004659CBD	NA	NA
UHGV-0132597_5	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0132597_5	Pfam	PF05339	NA	DUF739
UHGV-0132597_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0132597_5	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0132597_6	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0132597_6	UniRef90	UniRef90_UPI000E4A5456	Rha family transcriptional regulator	NA
UHGV-0132597_6	eggNOG-mapper	1304866.K413DRAFT_3063	TIGRFAM phage regulatory protein, Rha family	NA
UHGV-0132597_6	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0132597_6	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0132597_6	COG	COG3617	Prophage antirepressor	NA
UHGV-0132597_6	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0132597_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0132597_10	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0132597_10	UniRef90	UniRef90_A0A2N5P5D9	AntA domain-containing protein	NA
UHGV-0132597_10	eggNOG-mapper	1408823.AXUS01000009_gene1978	AntA/AntB antirepressor	NA
UHGV-0132597_10	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0132597_10	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0132597_10	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0132597_13	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0132597_13	Structural annotation	PF10743, NF040990, COG3311	NA	NA
UHGV-0132597_16	PHROG	phrog_5070	NA	unknown function
UHGV-0132597_16	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0132597_16	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0132597_16	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0132597_16	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0132597_16	Structural annotation	NF040481	NA	NA
UHGV-0132597_18	PHROG	phrog_30234	NA	unknown function
UHGV-0132597_18	eggNOG-mapper	33035.JPJF01000135_gene5083	NA	NA
UHGV-0132597_20	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0132597_20	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0132597_20	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0132597_20	Pfam	PF13479	AAA domain	AAA_24
UHGV-0132597_20	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0132597_21	PHROG	phrog_18107	NA	unknown function
UHGV-0132597_21	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0132597_21	Structural annotation	PF05037	NA	NA
UHGV-0132597_22	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0132597_22	UniRef90	UniRef90_UPI00156FB923	ERCC4 domain-containing protein	NA
UHGV-0132597_22	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0132597_22	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0132597_22	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0132597_23	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0132597_23	PHROG	phrog_11992	NA	unknown function
UHGV-0132597_23	UniRef90	UniRef90_UPI00156FEB22	CHC2 zinc finger domain-containing protein	NA
UHGV-0132597_23	eggNOG-mapper	1304866.K413DRAFT_0824	CHC2 zinc finger	NA
UHGV-0132597_23	PADLOC	drt-UG29	DRT	DRT
UHGV-0132597_23	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0132597_23	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0132597_23	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0132597_24	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0132597_24	UniRef90	UniRef90_UPI00156EF603	NA	NA
UHGV-0132597_24	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0132597_24	Pfam	PF06048	NA	DUF927
UHGV-0132597_24	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0132597_24	COG	COG5519	NA	NA
UHGV-0132597_24	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0132597_26	PHROG	phrog_23374	NA	unknown function
UHGV-0132597_26	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-0132597_27	Structural annotation	NF041290	NA	NA
UHGV-0132597_29	PHROG	phrog_10714	NA	unknown function
UHGV-0132597_29	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0132597_30	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0132597_30	UniRef90	UniRef90_U2DJA0	Restriction alleviation protein, Lar family	NA
UHGV-0132597_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0132597_30	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0132597_30	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0132597_32	PHROG	phrog_15198	NA	unknown function
UHGV-0132597_32	UniRef90	UniRef90_UPI001185FC09	NA	NA
UHGV-0132597_32	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0132597_34	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0132597_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0132597_36	UniRef90	UniRef90_A0A7X4ZQ48	RNA polymerase subunit sigma-70	NA
UHGV-0132597_36	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-0132597_36	Structural annotation	PF02996	NA	NA
UHGV-0132597_37	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132597_37	UniRef90	UniRef90_A0A3E4V813	HNH endonuclease	NA
UHGV-0132597_37	eggNOG-mapper	1232453.BAIF02000028_gene2717	HNH nucleases	NA
UHGV-0132597_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0132597_38	Structural annotation	PF04320, MF_00360, NF008333, COG3171	NA	NA
UHGV-0132597_39	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0132597_39	UniRef90	UniRef90_UPI001D0DE0A6	P27 family phage terminase small subunit	NA
UHGV-0132597_39	eggNOG-mapper	1158604.I591_01771	Phage terminase, small subunit	NA
UHGV-0132597_39	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0132597_39	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0132597_39	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0132597_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0132597_40	UniRef90	UniRef90_A0A3E4V817	Terminase large subunit	NA
UHGV-0132597_40	eggNOG-mapper	1232453.BAIF02000028_gene2720	Phage Terminase	NA
UHGV-0132597_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0132597_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0132597_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0132597_40	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0132597_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0132597_41	UniRef90	UniRef90_A0A3E4V862	Phage portal protein	NA
UHGV-0132597_41	eggNOG-mapper	1232453.BAIF02000028_gene2721	Phage portal protein, HK97 family	NA
UHGV-0132597_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0132597_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0132597_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0132597_41	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0132597_42	KOfam	K06904	NA	NA
UHGV-0132597_42	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0132597_42	UniRef90	UniRef90_A0A3E4V855	HK97 family phage prohead protease	NA
UHGV-0132597_42	eggNOG-mapper	1232453.BAIF02000028_gene2722	Phage prohead protease, HK97 family	NA
UHGV-0132597_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0132597_42	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0132597_42	COG	COG3740	Phage head maturation protease	NA
UHGV-0132597_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0132597_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0132597_43	UniRef90	UniRef90_A0A415S777	Phage major capsid protein	NA
UHGV-0132597_43	eggNOG-mapper	1232453.BAIF02000028_gene2723	capsid protein	NA
UHGV-0132597_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0132597_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0132597_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0132597_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0132597_44	PHROG	phrog_366	tail fiber protein	tail
UHGV-0132597_44	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-0132597_44	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0132597_44	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0132597_44	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0132597_45	PHROG	phrog_2550	NA	unknown function
UHGV-0132597_45	UniRef90	UniRef90_A0A3E3JYI5	Phage gp6-like head-tail connector protein	NA
UHGV-0132597_45	eggNOG-mapper	1232453.BAIF02000028_gene2725	NA	NA
UHGV-0132597_45	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0132597_46	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0132597_46	UniRef90	UniRef90_UPI001D057432	phage head closure protein	NA
UHGV-0132597_46	eggNOG-mapper	1232453.BAIF02000028_gene2726	NA	NA
UHGV-0132597_46	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0132597_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0132597_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0132597_47	UniRef90	UniRef90_UPI000465037A	HK97 gp10 family phage protein	NA
UHGV-0132597_47	eggNOG-mapper	1158604.I591_01763	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0132597_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0132597_47	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0132597_48	PHROG	phrog_78	tail terminator	connector
UHGV-0132597_48	UniRef90	UniRef90_A0A0D6DV47	Prophage pi2 protein 38	NA
UHGV-0132597_48	eggNOG-mapper	272623.L59277	NA	NA
UHGV-0132597_48	Structural annotation	PF20765	NA	NA
UHGV-0132597_49	PHROG	phrog_88	major tail protein	tail
UHGV-0132597_49	UniRef90	UniRef90_A0A3E4V8A6	Phage tail protein	NA
UHGV-0132597_49	eggNOG-mapper	1232453.BAIF02000028_gene2729	phage major tail protein, phi13 family	NA
UHGV-0132597_49	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0132597_49	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0132597_50	PHROG	phrog_709	NA	unknown function
UHGV-0132597_50	UniRef90	UniRef90_A0A0D6DV15	Prophage pi2 protein 40	NA
UHGV-0132597_50	eggNOG-mapper	1232453.BAIF02000028_gene2730	NA	NA
UHGV-0132597_50	Structural annotation	PF19591	NA	NA
UHGV-0132597_51	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0132597_51	UniRef90	UniRef90_A0A3E4V829	Phage tail tape measure protein	NA
UHGV-0132597_51	eggNOG-mapper	1232453.BAIF02000028_gene2732	Phage tail tape measure protein, TP901 family	NA
UHGV-0132597_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0132597_51	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0132597_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0132597_51	COG	COG3953	SLT domain protein	NA
UHGV-0132597_51	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0132597_52	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0132597_52	UniRef90	UniRef90_UPI001186A0C2	phage tail family protein	NA
UHGV-0132597_52	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0132597_52	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0132597_52	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0132597_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-0132597_52	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0132597_53	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0132597_53	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0132597_53	UniRef90	UniRef90_UPI001D040907	collagen-like protein	NA
UHGV-0132597_53	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0132597_53	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0132597_53	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0132597_53	Structural annotation	PF14594, PF08931, PF13895, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-0132597_54	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-0132597_55	PHROG	phrog_10091	holin	lysis
UHGV-0132597_55	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-0132597_55	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0132597_55	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0132597_55	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0132597_55	COG	COG5546	NA	NA
UHGV-0132597_55	Structural annotation	COG5546	NA	NA
UHGV-0132597_56	PHROG	phrog_918	NA	unknown function
UHGV-0132597_56	UniRef90	UniRef90_UPI001CF89D06	NA	NA
UHGV-0132597_56	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0132597_56	Pfam	PF19791	NA	DUF6275
UHGV-0132597_56	Structural annotation	PF19791	NA	NA
UHGV-0132597_58	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0132597_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA